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Information for unigene UN23597

FASTA Sequence
Unigene ID: UN23597Length: 875 SSR 
GTCTTGAGACTTTCCTTAAAGACTGTAAATCATCCTTCTTAAAAGCGTCCTCTCTTCGAAGAGCCTCCTCTTGCTCTTTCTTTGAC
AACTTTTGCTCCGTTAGCTTTCGTGTCCGTGCAGTATCACGATCTCTTAAATGCTGCTCGAGTTCTTCTCTCTCCTTTTGGTCACG
CACTCTTTCCTCTTCGGACTCAGAACCATCATCCTCGTCTTCAGAGACCTTTCTTCTAACGTTTCTACTTTCCTCTCTAACAGGCA
CCTCTTCATCACTGTCATCAGACTGCCCACTTTTCTTTCTAAACCTCTTCTTAGCCTTATCTGACTTTCTAGATTCAGAAGCTGAA
GGTTTTTTCTCCTTAACCACTTCGTCTTCATCATCATCATCATCATCTATAAGAGTGTATGTTTGTTGCTTCCTAACTAGCATCGC
TGCCTCTGCTTCCCGCTGTTGGTAGAGATTGACACCAGCAGTTTTATGAGGAACTCTAGCAAAAATCTCTTCAGCAAAGGAACGAG
TATCACCAGAAGAAGCAATCCCATAATCCACCAACACTCCAACAATTTCAGCTGGTGATTTTGATTCTATAGCCATTTTAATGAGA
TAGCTAACAACAGATTTGTCAGAATAGCCAAGTAGCACCATCAGCTTGTCCGAAACCCATGTCCTCAAATCGTTGCTCCCCATTCT
CACCTAGATTTCGGTAACTAACGTCAACCGGAGCTTACAGAGTGAGAAGATATAGAGATTTAAAGGATGTCAGTTTTCGCGAGAGG
CGCGAGCGTACACGGCGGAATCTGTCCAAGTGATTACACCGGCGACAGTGAGAGTCTCCGACGTCGATGGAGGAGGCTTATATAGA
TGGAGGAAAGGGACC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_174527 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Arabidopsis thaliana]8981e-094
NP_001185127 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Arabidopsis thaliana]8981e-094
AAF81347 Strong similarity to an unknown pre-mRNA splicing factor RNA helicase At2g35340 gi|3608155 from Arabidopsis thaliana BAC T32F12 gb|AC005314. ESTs gb|AV566249 and gb|AI998735 come from this gene8846e-093
BAE98860 putative pre-mRNA splicing factor RNA helicase [Arabidopsis thaliana]7743e-080
NP_181077 helicase domain-containing protein [Arabidopsis thaliana]7743e-080

Swiss-Prot top hits (Blast detail)Scoree value
Q8H0U8 DEAD-box ATP-dependent RNA helicase 421593e-010
Q54MH3 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX161575e-010
Q8T6B4 ABC transporter F family member 41461e-008
Q9U7E0 Transcriptional regulator ATRX homolog1397e-008
Q54T81 Probable H/ACA ribonucleoprotein complex subunit 41343e-007

TrEMBL top hits (Blast detail)Scoree value
Q8VY00 Putative RNA helicase8981e-094
Q9LQK8 F5D14.27 protein8844e-093
Q0WVI8 Putative pre-mRNA splicing factor RNA helicase7742e-080
B9S9P4 ATP-dependent RNA helicase, putative6093e-061
B8B9U1 Putative uncharacterized protein5512e-054

Arabidopsis top hits (Blast detail)Scoree value
AT1G32490.1 ESP3 (ENHANCED SILENCING PHENOTYPE 3); ATP binding / ATP-dependent RNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding8986e-097
AT2G35340.1 MEE29 (maternal effect embryo arrest 29); ATP binding / ATP-dependent RNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding7741e-082
AT1G20920.1 DEAD box RNA helicase, putative1593e-011
AT2G18540.1 cupin family protein1469e-010
AT5G60030.1 unknown protein1352e-008

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
121  33%
 
62  67%

Unigene MembersMember information