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Information for unigene UN23604

FASTA Sequence
Unigene ID: UN23604Length: 1525 SSR 
GTACAAGGCTGCGAGTACATGTCACAAGACAAACAAACCTAAAATAAAATTTGTATTGAAGGACAAGAAAACAAAAGAGAGGTTCA
AAACCAAGAACAACACTGGGCTACGAATAGGCTGGTCTGCTTCATTTGCTTCCAAGAAGATAGAACAGGTAGAGACTGCATTGATA
CCCTAATTTGCATAGAAGCGAGAACGACGCCTTCTTGAATTGTAAACCAAAAAGAACCTTTGATGCATAGCGCTACTTGTGTTAAT
TCCACCTGTGGTGGTGGTGATGAACTCATCATCGATCTCATCTACTCTATACACAGGGAACTCTATCGACGCTACTGAGCTGCTGC
TATCATCAAAGTTGGAGTTATCATAGCTAGAGCGGCGACTCCCTCTCCTACTCTCATTAATCATCATCCTCGACCTTCTTCGATTC
CTCCTGGCATTCCTTATATTATCAAACACTTTATACAAAATACAAGAAGTCCACCAGCTGCTCCCTGCATTGCCAGGAGCATCCTC
GAACTCACCTCCAGCGCCATCATCATCATCATCATCATCTCCGTACTCGATCACATAGTCTCCCAACACCACACCTCTCGGAACCT
CAGAGTGAATCGTGCTCAGCACGTCGATAATCTCAGACGACTGCTGGAAATTCTCCCAGTCGAGCTTCCTCGCCGGATCAATCTTG
GAAGGGCGAGAGTCCGGATGCTCTGACTTAGCGTGTTCCCGAAGCTCGGCGTAAGTACCGGCGAACCTGCAGCGTTGTTCCTCGCA
AGAACGTTTCTTCTCGTCGAGAAGAAGACGAGCTTCTTCCACAACCACCCATCCGGTGACCTCTCCTCTGCAGAGTGGACACAGTG
GTTTGCAGTTTTCCTCTAAAACCTTAGACAGTGTTTCATCATCAGGGGCTGGAGCTAGAGGAGGAGGAGGTGAGTCTGTTGTTTTA
CAGGCGGTGATGAAACGATCTAGGCAGTTGGAGTGGAGATGATCAGTGTTGCAGAGGAAGGCACGGCAACCGTTTTGGTAAGAAGA
GCACTGGAGGAGAACGCCGTTGTGAGGGGAGTCTAAGCAAATAGGGCAAACTAAATCATCCCAGTTGATGATCGTCGTCGTCGTCA
GGCTGCAAAAGGTCTTTGCTTGAAGGTTGTTTTCGCAGACAAGTTCCATAAAGTTCCAAACTTTATTTTTTATTTTTTTTTGCTAT
TGAGATCAAGACCCTTCTTTTAAGTCATTTCCTTGATCAAAAATCGAATCCAGAACCCTAAAGGGAAAACTAGAAGCGGATCCGAG
TAAACAGAGAGGAAGCGAATTGGTGAGATAATCGTTAAGCAACGAAATCGAATTAAAGCGAGATTTGAGGAGTGTGATCGAATCGA
AAGTCGAAGAAGAAGAGGAAGGCTGACCTTTTTTTGTTGAGATTTGGCAGTTTTCTCAATCCGAAGAGGTGAGGAGGAGATGGGGT
TTTCTTGTGTGCGATAGTGCTTCTTCTTTTGAACAAGCCTAGCCATTAGCCATTAGCCATTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002869327 hypothetical protein ARALYDRAFT_491599 [Arabidopsis lyrata subsp. lyrata]12272e-132
NP_567874 uncharacterized protein [Arabidopsis thaliana]12093e-130
CAA16544 hypothetical protein [Arabidopsis thaliana]12031e-129
CAN62770 hypothetical protein VITISV_027108 [Vitis vinifera]9826e-104
XP_002282756 PREDICTED: hypothetical protein [Vitis vinifera]9818e-104

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q8S9L2 AT4G31410 protein12092e-130
O49590 Putative uncharacterized protein AT4g3141012031e-129
A5ASM3 Putative uncharacterized protein (Fragment)9824e-104
B9ILG4 Predicted protein9547e-101
B9SPP5 Putative uncharacterized protein9475e-100

Arabidopsis top hits (Blast detail)Scoree value
AT4G31410.1 unknown protein12143e-133
AT4G31410.2 unknown protein12143e-133
AT1G68140.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G08460.2); Has 157 Blast hits to 148 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 4; Plants - 143; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).4096e-040
AT3G24740.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT3G25910.1); Has 135 Blast hits to 134 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).3362e-031
AT3G24740.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT3G25910.1); Has 135 Blast hits to 134 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).3362e-031

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
122  25%
 
92  25%
 
64  50%

Unigene MembersMember information