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Information for unigene UN23605
| FASTA Sequence |
| Unigene ID: UN23605 | Length: 1597 |
SSR | | CGTGGTTATAAATACGTTCCAGATTTCATATGTAATGACTAATGAGAATCCAAACCCTCTCGAGGTACCGTACAACACAATGAGTA
GGTATAGACGTTGTCACGCGTGAACATACAAAAGGGTGCCACTAAGTACTAAGGAAACCAAACCATAGATACGTTTGTCCCCTAAC
TCCAAACTATGGTTTATTATTTTGTTCATACATGACTAACAAGCAGAGTGTGAGAGACCACTCATATAGCAAATCAGCGTGAGTAT
CCAGGACTCTGGCTCCTGCTTCTCGACTCATAGCGAGATCTTGAGCTCGACCTTGAGTACGATCGCCTCCTATCCCCCGGTGAAAC
AGATCTTGAACGGTGCCTTCCATCATATGGTGAACGTGAGTAGCTTCTCCTGTAGACTGGCGAACGTGAGTAGCTCCTTCTGTAGT
TTGGCGAACGTGAATAGCCAGGAGACCGGGAGTAACCATATGGAGATCTTGTAGATGTCCTTCCCCTTGATCGTTCTCTCATTTCA
GAAGGCTTCTTTCTGTTCTCCTCTGCAAACACCACAGTGATTTCGCGGCCTAGAAGAACATAGCCATCCAGATGGTACTTTGCATC
TGCAGCATCATCAGGATCATAGTACTGCACAAAGCCAAATCCGCGAGGCTCCCTGCAAGTCACCAGCGTCACAAATTGAGCCTACA
ATTATCAAAACAAGTAACTCTCTTCTAAGTTTTGAACAAAATTGGCAATAGAGAACTCCAGCATGAATTATGAAACACACAAAAAA
ACTTGAATAGATCAAGCACAAACAATCAGCTAGCTTCTAACCTTTTCGAAGCCACTGTACTAACTTCGACTTTGACCAGAACATCT
TCAAAATCGAAACAAGAAACCAACTCTGTTATCAACACTACTCTTAACCTACCTCTTGTAGTCCCAAACAAAGTAATATTGGGTCT
CATGCACATTAATCTTTCCTACTTCTTCATCTTCATCACTTCCAATAAGACAAACCAAACTTTTTGATAAACCAACAAGATTGATC
ATAATTATACTGTCACTTAATACAAAGCTAGGACAGTAAGAGGTCACGCAATTAGTAGGAAAAAAATCGCCAATCACTCACCCAGT
GTAATAGTTACGAGGTATGTAGATATCCTTGAGACGACCAAACCGCCCAAATGGTCTACGGAGATCATCTGGCCTGTAATTAAAAC
GGTTCCAACACACACACAATTTGAGCATTTGACAATATCGAAAGGTGAGAGCTTTTAACATTTCTTGTGTTTCGAACTCAAAACGA
TTTACACATTCCCAAAGAGAGCTAGTAGGTGCATGATGCATGCACAAAAACACACGAGTAGATCAGTTGTGTAATAATTACCGACA
GTCGAGCCGGAGATTGCGAACAAGTAGGCTGGTTGGGGGATCTCTACTCCGAGCTCTGTAGTGTCCCGCGGGACTTGGGCTTCTGT
ACCTTCTCCTTGGTGGTGATGGAATGTAACTATAATAGGTCCTCCCCATATTCTCACTCACTCTGTATGATCCCACAAGAGAAACA
AAGTGCTCAATTCGCCTGTGATAGCTCTCTCTCTCTCTCTCTCTCTCTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002531582 serine/arginine rich splicing factor, putative [Ricinus communis] | 388 | 5e-035 |
| ACU18080 unknown [Glycine max] | 365 | 2e-032 |
| ACU22994 unknown [Glycine max] | 364 | 3e-032 |
| CBI16510 unnamed protein product [Vitis vinifera] | 363 | 4e-032 |
| ABF96206 RNA recognition motif family protein, expressed [Oryza sativa Japonica Group] | 352 | 7e-031 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O75494 Splicing factor, arginine/serine-rich 13A | 215 | 2e-016 |
| Q9R0U0 Splicing factor, arginine/serine-rich 13A | 215 | 2e-016 |
| Q8WXF0 Splicing factor, arginine/serine-rich 13B | 183 | 1e-012 |
| Q9UQ35 Serine/arginine repetitive matrix protein 2 | 147 | 2e-008 |
| Q18409 Probable splicing factor, arginine/serine-rich 6 | 134 | 6e-007 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9T013 Serine/arginine rich splicing factor, putative | 388 | 3e-035 |
| C6T8C8 Putative uncharacterized protein | 365 | 2e-032 |
| C6TJA4 Putative uncharacterized protein (Fragment) | 364 | 2e-032 |
| Q10KQ7 RNA recognition motif family protein, expressed | 352 | 5e-031 |
| B8AQ95 Putative uncharacterized protein | 350 | 8e-031 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G13570.1 SCL30a; RNA binding / nucleic acid binding / nucleotide binding | 336 | 2e-031 |
| AT1G55310.1 SR33; RNA binding / protein binding | 315 | 5e-029 |
| AT1G55310.2 SR33; RNA binding / protein binding | 315 | 5e-029 |
| AT3G55460.1 SCL30; RNA binding / nucleic acid binding / nucleotide binding | 218 | 9e-018 |
| AT5G18810.1 SCL28; RNA binding / nucleic acid binding / nucleotide binding | 199 | 1e-015 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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