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Information for unigene UN23662
| FASTA Sequence |
| Unigene ID: UN23662 | Length: 1243 |
SSR | | CATCATCAACCAAGGTTATTATTATTGCCACAACTTTCAGCAAAAGCCTAATGTTACAATCCTACAGGGTTCTTACGATACCCAAT
AGACGATTTTAGCACCCAACTCACTCTAATGATGCATATGCTCATTGCTCAGAGATCTCCATCAATACAACACAACATAACACCCT
AAAGAATGGATAAAACTAGTAACCCTGACCAGATAGTGCATCAAGACCAGAACCACCACCAATGCGTCTAAACTGTGATCTTCTGA
CAAGCATTTTGAAAAAGGGTATGAAAGTACCATGAGTAATGGTGAATGGATCACCTTCCTCTTGACAGTGCCTCCTCTAACTCTTC
AACTGATGAAGGAAACAGTTCTATGTAACGGCTCCCTAGCGTCTTCCTGTCCTTGACCATCGCAGCTCTTGATTCTTCTGCGCTCC
TGAACTCTACAAACGCATCTCCAGTGGGTCGCCCTTCACCGTTGACAGTAACATGAACAGAGTCTTCAGACAGATCAAAATCTCTG
AAGAAGTCTAGTATGTCTTCTTTCCCTGCTGAGAAAGGTAACCCTCTCAGTCTCAGTATACCCGTATGCTCAGCATTCTCTTTCCC
ATCATCACTCGGTCTAACCCTCTGCACCTGTCTACGTGGTGAACGTCCACCACTCACACCACCTCTTCCACCGCTCCCACCACCAT
CACCACCACCACCACCACCAGTAACTGTACCATGGACACGAGACTCCGCAACCTCACTAGCAATAGCCTTATAGTACTCTTGCTTC
GTACTCCTAAAAACCTCAACATATCTCCTCCCCATGTTCTGCCTGTTCTTACCGAGCGCAAAATCAACCTGAAGGGGATAGCCAAG
AACGCAAAAGGCTTCCCCAGTGACCTTATTGTTCTTGTGAACAAACAAGACGTCAACCACGTCTAAGCCATGGAAGAACTCCAAAA
CATCGCGGTCAGAGCAATCAAAGGGGAGACCGCGGAGTTTAACCACAGGGAAAACAGGAGGAGGAACGAAACCATAAGGGTTATAC
ATAAAGGCAGAAGCAGGATGAGGTGCATAGAATGATCCTGGAGGAGCTTGTCCACTCATTCTTTGACGCTTAGGTCCCGTTTCACG
CCCATCAGGACCATCTCCATATCCTCTGTAGAACATTGTCGCCTGTGAGGATGACCAATTCGATTGGAACTTTCGAGGATGCTCGG
TGAATTTTTGAACCTTCGAATTTGGAATCGTGCCTTCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_188725 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] | 767 | 4e-079 |
| XP_002883276 hypothetical protein ARALYDRAFT_318838 [Arabidopsis lyrata subsp. lyrata] | 747 | 8e-077 |
| XP_002973196 hypothetical protein SELMODRAFT_413714 [Selaginella moellendorffii] | 713 | 7e-073 |
| XP_002976657 hypothetical protein SELMODRAFT_416554 [Selaginella moellendorffii] | 699 | 3e-071 |
| BAB02497 unnamed protein product [Arabidopsis thaliana] | 685 | 1e-069 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P31942 Heterogeneous nuclear ribonucleoprotein H3 | 187 | 3e-013 |
| Q5E9J1 Heterogeneous nuclear ribonucleoprotein F | 187 | 3e-013 |
| P52597 Heterogeneous nuclear ribonucleoprotein F | 187 | 3e-013 |
| Q60HC3 Heterogeneous nuclear ribonucleoprotein F | 187 | 3e-013 |
| Q9Z2X1 Heterogeneous nuclear ribonucleoprotein F | 187 | 3e-013 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LT32 Genomic DNA, chromosome 3, P1 clone: MOE17 | 685 | 9e-070 |
| C1E0A7 Predicted protein | 593 | 4e-059 |
| B9GF04 Predicted protein (Fragment) | 544 | 2e-053 |
| B9RID2 Heterogeneous nuclear ribonucleoprotein, putative | 528 | 1e-051 |
| C6TIW5 Putative uncharacterized protein | 517 | 3e-050 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G20890.1 RNA binding / nucleic acid binding / nucleotide binding | 1193 | 6e-131 |
| AT5G66010.1 RNA binding / nucleic acid binding / nucleotide binding | 330 | 7e-031 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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