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Information for unigene UN23676

FASTA Sequence
Unigene ID: UN23676Length: 720 SSR 
TTTTTTCTAAAGACTCGCTCACAGTTCCATCTCCCTCCACTCTCTTCTCCGATCCGAACTCGGTGTAACAAGATTGGATTAAGAAA
AAAAAAAAAAAAAGCAGCCATGTCAAGTTTTATAATGGCCACACCGTTTCCAGGATCTCTCACTCAATGCAAGAAAACGAATAACC
TGTCCCTTCAGAGAGCCTTTAAGGTAACATGTATGCAGACACCGTTGGAGGAGCTATACAACGTCAAAGTGGAACGGAAAGTGTCA
CAGAGACGGTTAGAGGAGCTAGGGGTTTCGAGATGGTCAGTTTGGAAGACTGGGAAATGCAAACTGCCGTGGGACTGGCAGGTGGA
TCAGTTGGTTTACATCGAAGAAGGAGAGGTTCGTGTCGTCCCCGAAGGCAGCAAGAGGTTTATGCAGTTTTTGGCTGGAGATCTTG
TTAGGTACCCGAAATGGTTGGAGGCTGATCTTTTCTTCAACGCTCCTTACCGCGAACGGTATTGTTTCAAGGCCTATGGTGATGAC
TGATGATTGATTCAGATGTAGAGTTTTGAGTTTAGAGCCCCCATGAATGTTTTACACTTATGTGTTGTTGTTGTTGTTGTAGTCTT
ATGGATCTTTTTGGGGATGATAAAATAACAAAACAATTTCTCTTATTCTTCTTCAGAAATTTGTGTAACGCTTACATAAAGTAAAC
AGAGCATAAATCTATGTGCGGATGAAGAAATC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
ABL97961 unknown [Brassica rapa]7017e-072
XP_002879405 PTAC18 [Arabidopsis lyrata subsp. lyrata]6882e-070
NP_565748 RmlC-like cupin-like protein [Arabidopsis thaliana]6864e-070
NP_180777 plastid transcriptionally active 18 [Arabidopsis thaliana]6839e-070
AAM64383 unknown [Arabidopsis thaliana]6783e-069

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
A1YN02 Putative uncharacterized protein7015e-072
O48852 At2g326506863e-070
Q9SKY2 Putative uncharacterized protein At2g321806836e-070
Q8LCZ1 Putative uncharacterized protein6782e-069
B9IAI8 Predicted protein4982e-048

Arabidopsis top hits (Blast detail)Scoree value
AT2G32650.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Protein of unknown function DUF861, cupin-3 (InterPro:IPR008579), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: PTAC18 (PLASTID TRANSCRIPTIONALLY ACTIVE 18) (TAIR:AT2G32180.1); Has 169 Blast hits to 169 proteins in 46 species: Archae - 0; Bacteria - 71; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).6871e-072
AT2G32650.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Protein of unknown function DUF861, cupin-3 (InterPro:IPR008579), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: PTAC18 (PLASTID TRANSCRIPTIONALLY ACTIVE 18) (TAIR:AT2G32180.1); Has 169 Blast hits to 169 proteins in 46 species: Archae - 0; Bacteria - 71; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).6871e-072
AT2G32180.1 PTAC18 (PLASTID TRANSCRIPTIONALLY ACTIVE 18)6843e-072
AT2G27402.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: PTAC18 (PLASTID TRANSCRIPTIONALLY ACTIVE 18) (TAIR:AT2G32180.1); Has 15 Blast hits to 15 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2103e-017
AT3G04300.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Protein of unknown function DUF861, cupin-3 (InterPro:IPR008579), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10300.1); Has 364 Blast hits to 364 proteins in 91 species: Archae - 0; Bacteria - 191; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).1475e-010

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
81  20%
 
94  80%

Unigene MembersMember information