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Information for unigene UN23680
| FASTA Sequence |
| Unigene ID: UN23680 | Length: 748 |
SSR | | GGACGGACTCTCGTTCGGCCGTTTCAGCTCTCTCTCAATCGCAAAACAAAGAATGGCTGGACAAAAGCAAGAGCTTCCCGTTTCCG
GCGAACCCTTAGCCGCCGTCGAGAGTCCGATGACAGACGCGATAAACAAGAAGAAGAAGAAGAGCAAGAAGAACAAACACGCAGAG
GTCGAAGTGCCTCAAGAGGTCGTCGAGGAGTTGAGTAGTAAAGAGAAGAAGAAGAAGCGTAAGAGAGAGGAGAAAGAGATGGAGAA
GAAGGAGGAGAAGAAGGAGAAGAAGGAGAAGAAGGACGAAGAGAGTGAGGCTTCAAACGGAGGAGAAAGTGATCAGAAGGTTGTTG
TCACCGGGAAAGGTGCGGAGGAAGCAAAGTACGCAGCTTTAACATCATTTGCTGAGTCGAAGTTGCCTGAGAATGTTCTTGATTGC
TGCAAGACTTTCCAGAAACCTTCTCCGATTCAGTCTCATTCGTGGCCCTTTTTGTTGGATGGTCGTGATCTTATCGGGATTGCCAA
AACCGGTTCAGGTAAGACATTGGCGTTTGGGATTCCTGCGATTATGCACATGTTGAAGAAGAACAAGAGTGGTAAAGGAACAAGGA
ACCCGACTTGTCTTGTTCTTTCTCCGACAAGAGAGTTAGCTGTTCAGATTTCTGATGTTTTGAGTGAAGCTGGAGAACCGTGTGGT
TTGAAATCGATTTGTGTGTATGGTGGAAGCTCTAAAAGCCTCAATTGACGCCATTCGATC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002890959 predicted protein [Arabidopsis lyrata subsp. lyrata] | 858 | 5e-090 |
| NP_174479 DEAD-box ATP-dependent RNA helicase 5 [Arabidopsis thaliana] | 842 | 3e-088 |
| XP_002519000 dead box ATP-dependent RNA helicase, putative [Ricinus communis] | 579 | 1e-057 |
| ACQ90244 DEAD-box RNA helicase [Glycine max] | 574 | 4e-057 |
| CAN76636 hypothetical protein VITISV_010658 [Vitis vinifera] | 565 | 4e-056 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9C551 DEAD-box ATP-dependent RNA helicase 5 | 865 | 3e-092 |
| Q6YS30 DEAD-box ATP-dependent RNA helicase 5 | 507 | 1e-050 |
| Q6CT46 ATP-dependent RNA helicase DBP3 | 359 | 2e-033 |
| Q5APT8 ATP-dependent RNA helicase DBP3 | 306 | 2e-027 |
| A5DAC8 ATP-dependent RNA helicase DBP3 | 296 | 3e-026 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9RZ31 Dead box ATP-dependent RNA helicase, putative | 579 | 7e-058 |
| C6G238 DEAD-box RNA helicase | 574 | 3e-057 |
| A5BAJ6 Putative uncharacterized protein | 565 | 3e-056 |
| C5X497 Putative uncharacterized protein Sb02g009590 | 510 | 7e-050 |
| B8A6R8 Putative uncharacterized protein | 507 | 2e-049 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G31970.1 STRS1 (STRESS RESPONSE SUPPRESSOR 1); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding | 865 | 3e-093 |
| AT5G63120.2 ethylene-responsive DEAD box RNA helicase, putative (RH30) | 263 | 2e-023 |
| AT5G63120.1 ethylene-responsive DEAD box RNA helicase, putative (RH30) | 263 | 2e-023 |
| AT1G55150.1 DEAD box RNA helicase, putative (RH20) | 252 | 4e-022 |
| AT3G01540.2 DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase | 232 | 8e-020 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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