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Information for unigene UN23746

FASTA Sequence
Unigene ID: UN23746Length: 776 SSR 
GGAAGAAATCAAGTTCCATCCCATTATTAGCCAAAGCATAATAAAAATACTCTCTCGATCCTGTGTTTCCAAGCAAGCAAGTTCCA
TGCCATGATGGACGCTCCAAACACCAAGCGTCCTCGACGACATGATGATGATGATGTAACCTCCTCAATTCAAAACCCTAATTCCC
TTCCAAACTTCGATTTGATCGTCTCTTCTCTGCTCTCGTCACCGTCGTTATCCTCCTCGCCGCACTCTTTCGATCAAGCTCTCGAT
CGCGCTCTCGCCTCCGCTTCCGACAGCGTCACCGATCAAGATCGCCTGGTCGATCGCACTGTCGAACTAGCCTCGCTTCTCCTCGA
CTCCACTAAACGGTGTTTCCGCAAGCGAGCCTCCCTTCACAATTCCAATTCTTGGGCCTTCCCTCGAGAACTCACCATCAAGATGT
TCTCGATGCTTGACAAAAAGTCTCTGATGCAAGCTATGGCATGCTGCACCATGTTCCACAAGTGTGCCAGGGACCCTTTATGTTAC
TCTCATATCGAACTTATAAACAAGAACGTTGATGATGGAGTGGTGCGTACCATGATCCATCGGGCTGGAAACAAACTCAGGTTCCT
TGAACTTGGTCAGGTTGCGTCCCCAGCTAGATCTTCAATGCCTCTGCTTACAGGATCTTGTCTTTACCCACTATTTGACAATCATT
CTTTCATCGGGAATGGCTTGAGACGTGTACACCTTTACAATCTCATTTCTACGTATGGAGCTGGTCTTGATAAGATATTAAATTGT
TC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002872816 hypothetical protein ARALYDRAFT_490282 [Arabidopsis lyrata subsp. lyrata]5825e-058
BAD42970 unnamed protein product [Arabidopsis thaliana]5781e-057
NP_192183 F-box protein SKIP17 [Arabidopsis thaliana]5781e-057
NP_192185 F-box protein [Arabidopsis thaliana]4841e-046
NP_001190662 F-box protein [Arabidopsis thaliana]4841e-046

Swiss-Prot top hits (Blast detail)Scoree value
Q0WRC9 F-box protein SKIP175787e-059
Q9SY03 F-box protein At4g027604845e-048

TrEMBL top hits (Blast detail)Scoree value
Q2V3L6 Putative uncharacterized protein4542e-043
B9H893 Predicted protein3503e-031
B9GSM6 F-box family protein3298e-029
A5BK27 Putative uncharacterized protein3234e-028
B9S410 Putative uncharacterized protein3217e-028

Arabidopsis top hits (Blast detail)Scoree value
AT4G02740.1 CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02760.2); Has 1691 Blast hits to 1200 proteins in 170 species: Archae - 2; Bacteria - 109; Metazoa - 687; Fungi - 197; Plants - 199; Viruses - 23; Other Eukaryotes - 474 (source: NCBI BLink).5786e-060
AT4G02760.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02740.1); Has 3231 Blast hits to 948 proteins in 145 species: Archae - 0; Bacteria - 50; Metazoa - 1253; Fungi - 344; Plants - 69; Viruses - 27; Other Eukaryotes - 1488 (source: NCBI BLink).4845e-049
AT4G02760.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02740.1); Has 3231 Blast hits to 948 proteins in 145 species: Archae - 0; Bacteria - 50; Metazoa - 1253; Fungi - 344; Plants - 69; Viruses - 27; Other Eukaryotes - 1488 (source: NCBI BLink).4845e-049
AT4G02733.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02740.1); Has 156 Blast hits to 154 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 136; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).4542e-045

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
101  50%
 
201  50%

Unigene MembersMember information