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Information for unigene UN23799

FASTA Sequence
Unigene ID: UN23799Length: 1217 SSR 
GTCGGAAAATCTTGGTATATTCAAAGATTTATAGATCAGAATATACAAGTGAGTAGAAAAACGTGTGTATATCTATCTAAGCGGTA
GAGAAGTAGAAAACTACTTCAACTTGGGTCTTGAGAGAAAAAAATAAAACTCAAAGATCATGAATAACACCTTCAATGAGTTTCTG
AGCTGCATCTCTAACACTCAAAAGGTTAGTTTTGATCTCATTGCACAATCTTCCTTCAACTAGCCGTACAGGTAACCACATCTTTG
GTTTTACATCCACGGTGTACGCAAGCGTGGTCGGAAAATCTTTAAACTGTAAATCCAAAGCCTCCCCTTTGTCTAACTGTGTAACA
AATAAAAACACAGATAGGAATTAAAAAAAAAAAGCTAGCTCTGAGGAAAGGTATTTGAAATGTGTTTGAAGATAATAGTAGTATTA
TTATTACTTGTTCGATGGACCATTTGCCTTCAAACAATTGAAAATCTCCTTCGACAATCTTGAAATCGATTTCACGTCTCCTCCCA
TGTGGCAGAATCTCAAGCTCCTTCTCGAAACAATCTAGAACAGCTTTGGCATTGAACTTAAGACCCAATGCTAAGTTTTGCTGTCC
CATCTGGAAAAGACGAACACGGTTTCCTTCCTTCTCCACCAACTCGCTGACGACAAGGCCCGGTATGAACTCCGACAGCTTCTCGT
AATCAGTCAACACGCTCCACACGGATTCAAGGCTAGCTTCCATTCCGATCTTCGAACGGATTCGCCGCGAGCTCTTCTCCTCGAGC
TTCTCCACCGAGATGAGAGCCCCATCCTCCACCGTCTTCCCATCTGTCAAGCATTCAACCAAATAATCATCCCTTTCACTCTCATC
CTCCTCCTCATAATAATAATAATAATCTTCGTCGCCAAATCGGCAGGTGAGACATCTACGAGAAGAATAAGCTAGCGGTAGTGTCG
AGGAAGGCGAATAGAAGGATGGAGTGTGAAATTTTATCGCTGGAGAATGTGAAATTGATACACTGGAGGTAGTGGTGGTGGCTAAT
GCGGCGGCGCGTGGGTGGCGGAAGGCGGAGGAGAAGTCTAATGCGAGCTGCATTGTTTTCTATAGATCTGGAAGTCTAAAAACAGG
GCTGGCTATGAACTATAGGCTTTTATTTGGGCCTCCCAATTTTTCTTATTTTCATAATGGGCCCATGATATGGTTTTATAAACAAA
CAAACCGTTTGAT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002872882 hypothetical protein ARALYDRAFT_490412 [Arabidopsis lyrata subsp. lyrata]7792e-080
AAC72863 T15B16.3 gene product [Arabidopsis thaliana]7721e-079
NP_192074 Polyketide cyclase / dehydrase and lipid transport protein [Arabidopsis thaliana]7721e-079
NP_849282 Polyketide cyclase / dehydrase and lipid transport protein [Arabidopsis thaliana]5792e-057
XP_002302698 predicted protein [Populus trichocarpa]4403e-041

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9M120 Putative uncharacterized protein AT4g016507727e-080
Q9ZSI3 T15B16.3 protein7727e-080
Q84VW2 At4g016505792e-057
B9GRV7 Predicted protein4402e-041
B9RN15 Putative uncharacterized protein4402e-041

Arabidopsis top hits (Blast detail)Scoree value
AT4G01650.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08720.1); Has 322 Blast hits to 309 proteins in 56 species: Archae - 0; Bacteria - 121; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).7724e-082
AT4G01650.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08720.1); Has 322 Blast hits to 309 proteins in 56 species: Archae - 0; Bacteria - 121; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).5799e-060
AT5G08720.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01650.2); Has 578 Blast hits to 324 proteins in 67 species: Archae - 1; Bacteria - 248; Metazoa - 1; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 269 (source: NCBI BLink).1927e-015

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
121  20%
 
94  80%

Unigene MembersMember information