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Information for unigene UN23807
| FASTA Sequence |
| Unigene ID: UN23807 | Length: 869 |
SSR | | TGCAGAGAGATCCAACCAAACTTAACAGTACTGCTGTCACAACTCGAAAGACGAAGAAGCAATAGATCTAACACAGCAACTTGTAA
TTTAGAGCTAAAGACTACAGGGAGAGAGAGAGAGGATGGATAAGATGAATCAGGCATTTGAGAAGATGAAGATGTTGGTGGGTATG
GAGGTTGAAGACGAGGAACGAGCTGCCGAAGAAGAAAGCTCTCTCTCGTTCATGGAAGATCTTAATCGCAATTGCGCTTTGACTAC
CAAACAGAGATTCTATGGATTTGCGATTTGCTTGTCAGCTGGCTTGGCATGTACTCTTTTGTCAATGCTTGTTTTCTTCAATCCCA
TCAAGTTTGGCTTCACATTCACCCTGGGAAATTTGATGGCACTTGGGAGCATTCCTTATAGGTCCACAACGACAGGTGTCGATGAT
GCTTGACCCAGCTCGCATCTACGCTACTGCTTTGTATCTTGCCAGCATTATCATTGCCTTGTTTTGCGCTCTCTATGTTCGTAACA
AGTTGCTGACACTGCTTGCTATCATTCTTGAGTTCTCTGGTCTAATATGGTACAGCTTGAGCTACATCCCTTTTGCAAGGACCATG
GTTTCGAAGGTGTTCATGACTTGTTTCGACACCGAGTTTTGAGCACAGCCCCTATACACATCAAGGATTTGTCGTCCCAAAACCAG
TGTGTTCTGTTTTAATGATTGGTCTGTGTTCAAAGCTGGACTTGTTTGATGCACGAAGAATGCTGAAAGCTCTAATAGTCTTTGGT
TTCTACTTTGCTTCTTAACATGAACTTCATGTCTTCACAACTCGTAGCACAGTTCGTTGTATATTTTGCTGTGGAATATAGGTTTT
GTGCGGCTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002874136 hypothetical protein ARALYDRAFT_489217 [Arabidopsis lyrata subsp. lyrata] | 447 | 3e-042 |
| NP_197746 Got1/Sft2-like vescicle transport protein [Arabidopsis thaliana] | 441 | 1e-041 |
| XP_002270756 PREDICTED: hypothetical protein [Vitis vinifera] | 371 | 2e-033 |
| XP_002305352 predicted protein [Populus trichocarpa] | 367 | 5e-033 |
| XP_002518017 Vesicle transport protein SFT2B, putative [Ricinus communis] | 366 | 7e-033 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q4FZV2 Vesicle transport protein SFT2B | 171 | 1e-011 |
| Q8VD57 Vesicle transport protein SFT2B | 168 | 3e-011 |
| O95562 Vesicle transport protein SFT2B | 167 | 4e-011 |
| Q5SSN7 Vesicle transport protein SFT2A | 161 | 2e-010 |
| Q5U3Y5 Vesicle transport protein SFT2A | 161 | 2e-010 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LT07 Putative uncharacterized protein At5g23550 | 441 | 1e-041 |
| B9H430 Predicted protein | 367 | 4e-033 |
| B9RW98 Vesicle transport protein SFT2B, putative | 366 | 5e-033 |
| C6T0X3 Putative uncharacterized protein (Fragment) | 359 | 3e-032 |
| B4FG59 Putative uncharacterized protein | 340 | 5e-030 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G23550.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24170.1); Has 455 Blast hits to 455 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 195; Fungi - 96; Plants - 62; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink). | 441 | 6e-044 |
| AT5G24170.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23550.1); Has 462 Blast hits to 462 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 206; Fungi - 92; Plants - 65; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink). | 260 | 6e-023 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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