RadishBase

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Information for unigene UN23819

FASTA Sequence

Unigene ID: UN23819	Length: 761	SSR
GGGAGTTTAGCAAAGCCAAAGTCCAAGAGAAACTCTCTCTCTCTCTTTGAATTTATTTGAGATGTAATGATCGGTTAAACTATAAT TTCGAAAAGAAAAAAAAAGGTCTTGTCTGGTTCCCTCTGGGTGTAATTGCTGTTTTGATGATGGGATTTTGCATCTGTCCGTTGGA GTCTCCGGCTAGATTACTATGGAGTACAAGCTTCTTTCGTCATAAGATCATCATCATCTTCTAATCCCCTTTAGCTTCATCGGTCT TTCTCTTACTCTCAACCCAATCCTCTCTCTGTCTCTTTGTTTTCTTTGTTACATCTGTATTTTCTTCTCTATGGAATCCAATTCGT TTTTCTTCGATCCTTCTGCCGCCCATGGCAACAACATGTTCTTCTTCCAAGGAGCAAGATCGATGATGAACATGGAGGAATCATCA AAGCGAAGGCCCTTCTTTTGCTCCCACGAGGATCTTTACGACGACGATGACTATAACGAAGACCACACACCCGACAAAAAGCGTCG CCTCACTACCCAACAGGTGCATCTGCTGGAGAAAAGCTTCGAGACGGAGAACAAGCTGGAGCCAGATCTCAAGACTGAGCTTGCTA AGAAGCTTGGTCTTCAGCCAAGGCAAGTTGCTGTCTGGTTTCAAAACCGACGTGCTCGTTGGAAACAAAGCAGCTCGAGAGAGACT TCAGTCTCCTCAAGTCTTCTTACGACCAACTCCTCTCTACTACGACTCCATCCTCACGACAACCATCTCCTCA

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002882180 homeobox-leucine zipper protein hat5 [Arabidopsis lyrata subsp. lyrata]	448	2e-042
BAJ33940 unnamed protein product [Thellungiella halophila]	443	6e-042
CAP16664 homeodomain leucine zipper protein [Solanum lycopersicum]	417	7e-039
XP_002278872 PREDICTED: hypothetical protein [Vitis vinifera]	412	3e-038
NP_186796 homeobox-leucine zipper protein HAT5 [Arabidopsis thaliana]	402	4e-037

Swiss-Prot top hits (Blast detail)	Score	e value
Q02283 Homeobox-leucine zipper protein HAT5	402	2e-038
A2X980 Homeobox-leucine zipper protein HOX16	325	1e-029
Q6YWR4 Homeobox-leucine zipper protein HOX16	325	1e-029
Q9XH36 Homeobox-leucine zipper protein HOX5	292	1e-025
Q6ZA74 Homeobox-leucine zipper protein HOX5	292	1e-025

TrEMBL top hits (Blast detail)	Score	e value
B6GVA3 Homeodomain leucine zipper protein	417	5e-039
C6T8D2 Putative uncharacterized protein	392	4e-036
B3IX27 Transcription factor Homeobox	383	4e-035
B9RUU7 Homeobox protein, putative	382	5e-035
Q8W1K4 Homeodomain leucine zipper protein CPHB-5	334	2e-029

Arabidopsis top hits (Blast detail)	Score	e value
AT3G01470.1 ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1); DNA binding / protein homodimerization/ sequence-specific DNA binding / transcription activator/ transcription factor	402	2e-039
AT3G01220.1 ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20); DNA binding / transcription factor	235	4e-020
AT4G40060.1 ATHB16 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 16); sequence-specific DNA binding / transcription activator/ transcription factor	224	7e-019
AT1G69780.1 ATHB13; DNA binding / sequence-specific DNA binding / transcription factor	219	3e-018
AT2G22430.1 ATHB6; DNA binding / protein binding / sequence-specific DNA binding / transcription activator/ transcription factor	217	4e-018

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	2			100%

Unigene Members	Member information