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Information for unigene UN23827
| FASTA Sequence |
| Unigene ID: UN23827 | Length: 795 |
SSR | | GGAAAGTGCCGGCCACTGAAAAGGGAGCATCATCGGCGAAGAGTCTCGGAGAAGAAGAAAAAAAACGTTCGCGGAGGTGTGACCTG
AGATCACGAAACAAACAAATCTCCTACTCGACCATTCATCACACCATGTTGAGAAGAATCGTCACCTCTCATCTCAAAACCCTAGC
CGCCGATGTCGCCTCTGCTTCTCCTCGCCGATCCATAGCCACCACCACCACCACCGCGAGACAACACGTTGGCTTCCATCGCGCCG
CCAATCCCGTTTCTTCTTCCGTCATCCCTCGCTGTTTCAGCTCTGAATCAGTAGAGAGAATAGCGAAGAAGAAGGTGGAGGATGTT
ATGCCCATTGCAACTGGACACGAGAAGGAGGATCTTCAAGCTGAACTTGAGGGGAGGAGACTGCTTGACATTGACTTCCCGGAAGG
TCCTTTTGGTACTAAGGAAGCTCCTGCTATAGTAAAGTCCTACTATGACAAGCGAATTGTGGGATGCCCAGGTGGTGAAGGCGAGG
ATGAGCACGACGTTGTGTGGTTCTGGCTGGAGAAAGGGAAGTCTTTTGAATGCCCGGTCTGCACTCAGTACTTTGAGCTAGAAGTG
GTTGGTCCAGGTGGGCCTCCCGATGGTCACGGTGATGAAGACGATGAGCATCACCACTGATTCCATAGCTTCTCACTTTTAATTTC
TTTTTACTATATTTTTACAATTTTTACTGGAATAAAAAGGTTCCACCGTTGGTGAAAAATGTTTTTGATCGTATTAGAACAACACT
TAATGCAACGACTCCTTTGAG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_188185 cytochrome c oxidase subunit Vb [Arabidopsis thaliana] | 773 | 4e-080 |
| XP_002882955 hypothetical protein ARALYDRAFT_479016 [Arabidopsis lyrata subsp. lyrata] | 763 | 5e-079 |
| NP_001078161 cytochrome c oxidase subunit Vb [Arabidopsis thaliana] | 754 | 6e-078 |
| XP_002894400 hypothetical protein ARALYDRAFT_892286 [Arabidopsis lyrata subsp. lyrata] | 664 | 2e-067 |
| NP_178140 cytochrome c oxidase subunit Vb [Arabidopsis thaliana] | 620 | 2e-062 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P00428 Cytochrome c oxidase subunit 5B, mitochondrial | 159 | 3e-010 |
| P10606 Cytochrome c oxidase subunit 5B, mitochondrial | 158 | 4e-010 |
| Q5REG2 Cytochrome c oxidase subunit 5B, mitochondrial | 158 | 4e-010 |
| Q5S3G4 Cytochrome c oxidase subunit 5B, mitochondrial | 155 | 8e-010 |
| P19536 Cytochrome c oxidase subunit 5B, mitochondrial | 150 | 3e-009 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LW15 AT3g15640/MSJ11_4 | 773 | 3e-080 |
| A8MRD7 Uncharacterized protein At3g15640.2 | 754 | 4e-078 |
| Q9SSB8 At1g80230 | 620 | 1e-062 |
| Q8LBW7 Cytochrome c oxidase subunit, putative | 618 | 2e-062 |
| A9PHK0 Predicted protein | 601 | 2e-060 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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