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Information for unigene UN23838

FASTA Sequence
Unigene ID: UN23838Length: 996 SSR 
GGAATCGGAGAAGAGATGGCTGAGGAACACAAACACGACGAATCTGTGACGGCTCCGGAGCCAGCTGTGGAGATCGTGGAGAGGGA
ATCGTTGATGGACAAGATAACGGAGAAGATCCACCACGGTGGCGATTCCTCCTCGTCGTCTTCATCGTCTGATGACGAGGACGATA
AGAAGAAGAAGAAGGAGAAGAAGCCGGAGTCTCCGTCTTCTGTGAAATCGAAAGTCTTCCGCTTGTTCGGAAGGGAGAAGCCTGTG
CATAAGGTTCTCGGCGGTGGATAGCCGGCGGATATATTCATGTGGAAGGAATCAAAGATACCTGAAGTTCATATCCCTGAGGAGCC
TATCCTTCAGCTCGCATCTGGGCTCAGAATCGAGATCAACCGTGGACTCTCCTCTCTTCGTGAGATTGCTTCTGGCAGGGATCTCA
AGAAATTCCTCTGTGCTATAGCCGGCTTGTGGGTTCTATCCATCATGGGCGGCTGGTTCAATTTCTTGACATTGGCATACATAGGT
AATTGCTTAATCTTTCGATAACGTTTTAGTGGGTTTGCTTCTCTCGTCTTACTGAACCCCTCTCTGATGACTAAGTCTCTTTTGTC
TGCTGCAACAGCTCTTGTGCTGCTCTTCACGGTTCCTCTTGTATACGACGAGTACGAAGACAAGGTCGACCCGTTAGGTGAGAAGG
CAATGATCGAGATCAAGAAGCAGTATGCAGTGTTGGACGAGAAGGTGTTGAGCAAGATCCCCATGGGCCCGTTGAAGAACAAGAAG
AAAGATTAGGGTTTACAAAATGGTGATCGTGTTCGTCAGATAGCAAGAAAAAAGGGTGTTGTGAAATGGTGTTGAAGCTTTATGTT
AGATCGTTTAATATGTTATGTGAATGAACGTGGATTTTCCTCGTTTTGTTTGTTTTTTCGTTTATGCCTATTGTTGGTGAACGTGG
AAGGGATACAATTAGTGTTGGGTTCTTTTTCTCTCTAAACCTACTATATA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_194094 reticulon-like protein B1 [Arabidopsis thaliana]4294e-040
ACC91263 reticulon family protein [Capsella rubella]4251e-039
BAJ33905 unnamed protein product [Thellungiella halophila]3311e-028
XP_002869770 VIRB2-interacting protein 1 [Arabidopsis lyrata subsp. lyrata]3174e-027
NP_192861 reticulon-like protein B2 [Arabidopsis thaliana]3112e-026

Swiss-Prot top hits (Blast detail)Scoree value
Q9SUR3 Reticulon-like protein B14292e-041
Q9SUT9 Reticulon-like protein B23503e-032
Q9FFS0 Reticulon-like protein B42689e-023
Q9SH59 Reticulon-like protein B32616e-022
O82352 Reticulon-like protein B52365e-019

TrEMBL top hits (Blast detail)Scoree value
B2WS91 Reticulon family protein4348e-041
B9DHX9 AT4G11220 protein (Fragment)3074e-026
B9DHL3 AT4G23630 protein (Fragment)2951e-024
B7FIA7 Putative uncharacterized protein2662e-021
B9RCJ7 Putative uncharacterized protein2627e-021

Arabidopsis top hits (Blast detail)Scoree value
AT4G23630.1 BTI1 (VIRB2-INTERACTING PROTEIN 1)4292e-042
AT4G11220.1 BTI2 (VIRB2-INTERACTING PROTEIN 2)3503e-033
AT5G41600.1 BTI3 (VIRB2-INTERACTING PROTEIN 3)2688e-024
AT1G64090.1 reticulon family protein (RTNLB3)2615e-023
AT2G46170.1 reticulon family protein (RTNLB5)2364e-020

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  100%

Unigene MembersMember information