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Information for unigene UN23843
| FASTA Sequence |
| Unigene ID: UN23843 | Length: 1118 |
SSR | SNP | GGGCCCAACACTTTTGAGTCTTGAAGAAAGGTCATCATCATCATCAACGTGAGAATAATGGCTTCTCTTTGTGCTTCTTCTGCCAT
TGCCGCCATATCTTCTCCTAGCTTCTTGGGAGGCAAGAAACTAAGGCTGAACAAGAAGTTGAGTGTTCCAGCTGTTTCCAAATCAG
CTGCGTCTGTGCGGGCCGTTGCAGCGGATCCCGAGCGACCAATCTGGTTCCCTGGAAGCACTCCTCCAGAGTGGCTCGACGGTAGC
CTCCCTGGTGACTTCGGATTCGATCCTCTTGGTCTTTCATCTGACCCGGATAGTCTAAAATGGAACGTACAAGCAGAGATAGTTCA
CTGCCGGTGGGCAATGCTAGGCGCCGCCGGGATTTTTATCCCGGAGTTTCTAACCAAGATCGGGATCCTCAACACTCCCTCGTGGT
ACACCGCGGGAGAGCAAGAGTATTTCACGGACAAGACCACACTCTTCGTCGTTGAGCTCATCTTAATAGGATGGGCCGAGGGTCGT
AGATGGGCTGATATCATTAAGCCAGGTAGCGTCAACACTGACCCAATCTTCCCAAACAACAAACTGACGGGTACAGACGTTGGATA
CCCGGGTGGGTTATGGTTCGACCCGTTGGGTTGGGGATCTGGCAGCCCGGCTAAGATCAAGGAGCTGAGGACTAAAGAGATCAAGA
ACGGAAGGTTGGCTATGTTGGCAGTGATGGGTGCTTGGTTCCAACATATATACACTGGGACTGGTCCTATTGATAACCTTTTTGCC
CATCTTGCTGATCCTGGTCATGCTACTATCTTCGCTGCTTTCACACCCAAGTGAGACGTCAAGAAAGGAGGATTTGGGAGAGAGAA
TGCGTTTATGTGATCATGTTTGTACAAATATGGTTTTTGAACTTAAAATATTATGTATTTAAGCAAATGGTGGTCGAATTGAAGTT
AGGGTTCGCCGTGTCACTACTCTTTTCCTGACTAAATGCTCATACATTGTGATTCGTGGTATGATAGTCAATCTCTTCTATTCTTT
GTTGGTTAATGCATCTCATGAGAATCATACGCACTTCTAACAACTGCTAATTACAACACCAAACATATCTTCAAATGTAGAGATTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_001147224 chlorophyll a-b binding protein [Zea mays] | 1362 | 3e-148 |
| ABO71660 LhCa2 protein [Brassica juncea] | 1345 | 3e-146 |
| BAJ34383 unnamed protein product [Thellungiella halophila] | 1341 | 9e-146 |
| CAB71077 Lhca2 protein [Arabidopsis thaliana] | 1336 | 4e-145 |
| NP_191706 photosystem I light harvesting complex protein [Arabidopsis thaliana] | 1335 | 5e-145 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P13869 Chlorophyll a-b binding protein, chloroplastic | 1177 | 4e-128 |
| P10708 Chlorophyll a-b binding protein 7, chloroplastic | 1164 | 1e-126 |
| P27521 Chlorophyll a-b binding protein 4, chloroplastic | 611 | 2e-062 |
| Q9SQL2 Chlorophyll a-b binding protein P4, chloroplastic | 600 | 3e-061 |
| Q36718 Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) | 487 | 4e-048 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B6SMV5 Chlorophyll a-b binding protein | 1362 | 2e-148 |
| A4URF4 LhCa2 protein | 1345 | 2e-146 |
| Q9M320 Lhca2 protein | 1336 | 2e-145 |
| Q9SYW8 Lhca2 protein | 1335 | 3e-145 |
| A9PGU3 Putative uncharacterized protein | 1144 | 4e-123 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G61470.1 LHCA2; chlorophyll binding | 1336 | 1e-147 |
| AT1G19150.1 LHCA6; chlorophyll binding | 801 | 1e-085 |
| AT3G47470.1 LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4); chlorophyll binding | 615 | 5e-064 |
| AT5G28450.1 chlorophyll A-B binding protein, chloroplast, putative / LHCI type II CAB, putative | 544 | 9e-056 |
| AT1G45474.1 LHCA5; pigment binding | 490 | 2e-049 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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