 |
Information for unigene UN23847
| FASTA Sequence |
| Unigene ID: UN23847 | Length: 1201 |
SSR | | GGGGGGAAAAAAAATGGAGGTAGCAGCAGCGACTGCGACGAGCTTCACAACGCTCCGAGCTCGTACGTCAGCGATAGTCCCGTCTT
CGACACGTAATCTGAGATCTAAAGCGAGATGTTCGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCAGAGCTTCTCTCTCGAAC
GGCTTACTCTCCCCGTACACCGGAGGAAGCATCTCTGTGACTTCTGCGGCGCCAAGCTTCGTACCGAATCGCTTAATCCGTTGAAT
ATCTCCAGCTCGAAGCCTAAGCGCGGAGTTGTCACTATGGTTATACCTTTTTCAAAAGGGAGTGCACACGAACAGCCTCCTCCTGA
TTTGGCATCATATTTGTTCAAAAACAGAATTGTATATTTGGGAATGTCTCTTGTGCCTTCCGTCACTGAGTTGATACTCGCCGAGT
TTCTTTACCTTCAGTATGAAGACGAGGAAAAGCCTATTTACCTCTACATTAACTCCACGGGGACGACCAGGAATGGTGAGAAGTTG
GGCTATGATACCGAGGCTTTTGCAATTTATGATGTCATGGGTTATGTCAAACCACCAATCTTTACTCTTTGCGTTGGGAATGCTTG
GGGGTGAAGCTGCTTTGCTTCTGACTGCTGGTGCGAAAGGAAACCGTTCTGCATTGCCCTCATCAACTATAATGATAAAACAGCCC
ATTGCTCGATTTCAAGCCAAAGCAACCGATGTTGAAATCGCAAGGAAGATCAATCACATAAAGACAGAAATGGTCAAGCTGTATTC
AAAGCATATTGGTAAATCCTCGGAGCAGATTGAGGCTGACATGAAACGCCCGAAATATTTTAGTCCCAGTGAGGCTGTTGAATACG
GAATCATTGATAAGGTTGTTTACAACGAAAGGAGCAGCCAGGACAGAGGAGTTGTGTCCGACCTTAAAAAGGCACAACTCATCTAA
TTTCAGAATTGTCTTCCCCCATGATTAACAGGTTGTTGGTTTGACCGCGGATCAAAGGAGGAATCGTTGGACCTATCATTGGCACA
GAACAGAGGTGAACTCTTGAAAGATGTGAAAAAATGTTACTACTAATGCTGAATTTTTAGGGTTATTCAATCATAGACAAACCTAT
TATGTGTAGGCTTGTGAATGCCTAGAAACAGAATTGGTGTAGCTTTCAATGTTCTAAACTTTTTAAATGAATCAGCTTCGTCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002868088 hypothetical protein ARALYDRAFT_493172 [Arabidopsis lyrata subsp. lyrata] | 684 | 2e-069 |
| NP_567521 ATP-dependent Clp protease proteolytic subunit-related protein 4 [Arabidopsis thaliana] | 676 | 1e-068 |
| CAB10484 Clp proteinase like protein [Arabidopsis thaliana] | 676 | 1e-068 |
| AAL91164 unknown protein [Arabidopsis thaliana] | 672 | 4e-068 |
| XP_002329556 predicted protein [Populus trichocarpa] | 619 | 5e-062 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8LB10 ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic | 676 | 6e-070 |
| Q8L770 ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic | 285 | 1e-024 |
| Q9XJ35 ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic | 243 | 9e-020 |
| A1JNN2 ATP-dependent Clp protease proteolytic subunit | 239 | 3e-019 |
| Q60107 ATP-dependent Clp protease proteolytic subunit | 239 | 3e-019 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A9PAS6 ATP-dependent Clp protease proteolytic subunit | 619 | 4e-062 |
| B9SZ03 ATP-dependent Clp protease proteolytic subunit | 591 | 7e-059 |
| D0EX73 ATP-dependent Clp protease proteolytic subunit | 576 | 4e-057 |
| C6T8Y5 ATP-dependent Clp protease proteolytic subunit | 575 | 5e-057 |
| B7FFG4 ATP-dependent Clp protease proteolytic subunit (Fragment) | 555 | 1e-054 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G17040.1 ATP-dependent Clp protease proteolytic subunit, putative | 676 | 5e-071 |
| AT1G09130.1 ATP-dependent Clp protease proteolytic subunit, putative | 285 | 1e-025 |
| AT1G09130.2 ATP-dependent Clp protease proteolytic subunit, putative | 285 | 1e-025 |
| AT1G49970.1 CLPR1; serine-type endopeptidase | 243 | 8e-021 |
| AT5G45390.1 CLPP4 (CLP PROTEASE P4); serine-type endopeptidase | 199 | 1e-015 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
