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Information for unigene UN23862

FASTA Sequence
Unigene ID: UN23862Length: 666 SSR 
GATCTCTGTAAATTCCCCATCTCTAGCGTTATCTCTTCTCTCTCTCTCCTATGGGTCTTCCTACAGATTTCAGGGAGCTTCAGATT
CCTGGTTACGTACTTAAGACTCTTTACGTCATCGGTTTCTTCAGAGACATGGTCGATGCGCTTTTTCCTTACATAGGTTTACCTCA
GTTTCTAGACCACGAGATTCCTCGACCGGACCCTTTGGTCCTTATCCAACCCGACAACTCCAGAGCCGTGAGTCTCGCTGACGAGA
TTTCCCCGGTGGTTCGTTTCTCGGATATCCAGACCGATCTTGAAGACTGCTGTACGGTGTGTCTCTCTGATTTTGAATCCGATGAT
GACATTAGGCAGCTTCCGAATTGTGGACACGTGTTTCATCATCGTTGTTTGGACCGTTGGATCGTTGATTGCTGCAAGGTGACGTG
TCTGGTTTGCCGGGATCGGTTTTTACCGACCGAAAGTTACTCGCGGATGGGTTCGGGTCTTGGTTTTGTTTGGTACAATGATGAAT
CTGAAAGTACCATTACCAACTTGTAATGATAATGATGGGTGTTGAATTTTCTGTGTCGGCAGTATAGGTGTTTTGTGTATAAATTC
CACCATAACACTCTTATATCTATCTGATCTTGTGTAGATATTTATATCCGATCAATATTCCCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
AAC68670 RING-H2 finger protein RHA1b [Arabidopsis thaliana]5842e-058
XP_002872579 ring-H2 finger protein RHA1b [Arabidopsis lyrata subsp. lyrata]5824e-058
NP_192875 E3 ubiquitin-protein ligase RHA1B [Arabidopsis thaliana]5762e-057
AAC68664 RING-H2 finger protein RHA1a [Arabidopsis thaliana]5573e-055
NP_192876 RING-H2 zinc finger protein RHA1a [Arabidopsis thaliana]5449e-054

Swiss-Prot top hits (Blast detail)Scoree value
Q9SUS5 E3 ubiquitin-protein ligase RHA1B5769e-059
Q9SUS4 RING-H2 zinc finger protein RHA1a5445e-055
Q5XF85 RING-H2 finger protein ATL4J1531e-009
Q9SJJ7 RING-H2 finger protein ATL2E1493e-009
Q8RXX9 RING-H2 finger protein ATL3B1493e-009

TrEMBL top hits (Blast detail)Scoree value
Q4TU16 RING finger family protein (Fragment)5357e-053
Q9CAJ8 At1g63840/T12P18_143181e-027
B9RCF4 Zinc finger protein, putative2911e-024
Q3YIJ7 At1g63840 (Fragment)2902e-024
Q3YI75 At1g63840-like protein (Fragment)2865e-024

Arabidopsis top hits (Blast detail)Scoree value
AT4G11360.1 RHA1B; protein binding / zinc ion binding5769e-060
AT4G11370.1 RHA1A; protein binding / zinc ion binding5444e-056
AT1G63840.1 zinc finger (C3HC4-type RING finger) family protein3187e-030
AT3G61460.1 BRH1 (BRASSINOSTEROID-RESPONSIVE RING-H2); protein binding / zinc ion binding2586e-023
AT5G41400.1 zinc finger (C3HC4-type RING finger) family protein2148e-018

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
71  50%
 
81  50%

Unigene MembersMember information