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Information for unigene UN23872
| FASTA Sequence |
| Unigene ID: UN23872 | Length: 1732 |
SSR | | GGATAATTGATTTTAAATAAATAATTTTCTAAGAAACAAAAAAAAAATGCAGAGAGAGAGAAGGAGAAGACGACAGGAGAGAGAGA
CGACCATATTGTCAATAGAGAGAGAGAGAGAAGAAGAAGGAGAAAGACGGAGACAACAATGGCGGAAGAAAATGGGGAGAAGAACG
AAGGAGGTGAAGAAGAAGAGAGCGTTAAGGTTTTCGTCGGGCAAATACCGAAACACATGTCGGAATCTCAGCTCCTTACATTGTTT
CAAGAGTTCGCTGTCGTCGAGGAGGTTAACATCATCAAGGACAAGATCACACGCGCCTCTCGAGGATGTTGTTTTGTAATATGTCC
ATCGAGAGAAGAAGCAGATAAGCTGGTCAATGCTTGCCATAACAAGAAGACATTACCTGGTGCAGCTAGTCTATTGCAAGTAAAGT
ACGCAGATGGCGAACTGGAAAGGCTAGAGCACAAGCTTTTTGTTGGTATGCTTCCAAAGAATGTCTCTGAAGCTGAACTTCTAACT
TTATTCTCCAAGTATGGGACCATAAAGGATCTACAGATTCTAAGAGGTGCTCAACAAACAAGCAAAGGCTGTGCTTTTCTCAAGTA
TGAGACAAAAGAACAAGCTGTTTCTGCCATGGAAGCCATCAATGGAATACACAAAATGGAGGGTTCAACTGTTCCTTTAGTTGTCA
AATGGGCAGACACAGAAAGGGAAAGACACACAAGAAGACTTCAAAAGGCTCAATCTCACATCGCTAGAATAGCTAACGCTGACCCA
ACAAACCCCTCTTTGTTTGGAGCATTGCCCATGAGTTATGCTCCACCATATAATGGATATGGTTACCATCAGGCTCCTGGAACTTA
TGGTTACATGCTACCACCAATTCAGAGCCAAGCTCCATTACCCGGTATAGGTAATAGCAACGCGTTGCAAAGAACGTCACCTGACT
CTGTGCCACCTCGCTTGGCCCGTAGAAACATTCCTTTGCCTCCAGCGAACTACATGGGCTCTGGTTATCCTCCTGTAAGAGGTCTC
CCTTATCCATTGGCTTATCCCAGATGGATTATGAATCCTCGCCCTCTAAGTAGCTCTCCTGGATCCATATCACCTGGCGGGTCAAC
ACCTCTAGGAATTGGTTTGAGTTCCGTGGTTCAAACTCAAACCGAAGGTCCGGAAGGTGCTAATCTGTTTATATATAATATACCTC
GTGAATATGGGGATCAAGAACTCGCGGCTGCGTTTCAACCTTACGGTATTGTTCTGAGCGCAAAGGTGTTTGTAGACAAAGCCACT
GGTGTAAGCAAATGTTTTGGTTTTGTTAGTTATGACTCACAAGCAGCCGCTCAGAACGCTATTAACATGATGAATGGTCGCCATTT
AGGCGGTAAGAAATTGAAAGTCCAGCTTAAGAGAGACAACAACAACAACAACAACAATGGTCAACAGAGTAGTTAAAACGCCTTAA
AACTCTCCTCAACTACAAAATTTCATGACGAAAAACAAAAGGTCGGGTAATGGGTCGACCCGTTTCAAGATTGGGACTAATCTTGA
ATGCATGCAGCTGTGTATAACTCCAAAACTCTCAAACCAAATCAAAACCTGTAACTTCCTCTGCAAGTGGATCATCTTTTTCTTTT
TTATTTTATTTCTTCAAAATAACAATTTGTAATTTATGCATCATTGAAATTCATGTAGACATTTTATGATTTATTAACATTAAATT
CATTGAACTTTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002872796 hypothetical protein ARALYDRAFT_490251 [Arabidopsis lyrata subsp. lyrata] | 1953 | 2e-216 |
| NP_567249 RNA-binding protein-defense related 1 [Arabidopsis thaliana] | 1949 | 5e-216 |
| AAC79095 putative ribonucleoprotein [Arabidopsis thaliana] | 1946 | 1e-215 |
| NP_849294 RNA-binding protein-defense related 1 [Arabidopsis thaliana] | 1760 | 4e-194 |
| XP_002520700 RNA binding protein, putative [Ricinus communis] | 1547 | 2e-169 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q7TN33 CUGBP Elav-like family member 6 | 653 | 4e-067 |
| Q08E07 CUGBP Elav-like family member 3 | 430 | 3e-041 |
| Q5SZQ8 CUGBP Elav-like family member 3 | 430 | 3e-041 |
| Q6DGV1 CUGBP Elav-like family member 4 | 430 | 3e-041 |
| A0JM51 CUGBP Elav-like family member 5 | 417 | 1e-039 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LFS6 AT4G03110 protein | 1949 | 4e-216 |
| Q9ZNS7 Putative ribonucleoprotein | 1946 | 8e-216 |
| Q8VZ45 Putative ribonucleoprotein | 1760 | 3e-194 |
| B9S3Y1 RNA binding protein, putative | 1547 | 1e-169 |
| B9I9Y4 Predicted protein (Fragment) | 1480 | 9e-162 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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