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Information for unigene UN23944

FASTA Sequence
Unigene ID: UN23944Length: 1105 SSR 
GATCGACTTTCTGATCAAAGCCCTGCCTGGCCACGCAGACGAAGACGGTCTTCCGGAGCTTCAAGATCACACCATCCTCACCAGAG
CCGAGACGGATTCAGAACAGCTCGCTCTTCTTGGAGCTGCGTTCACAATACTAGACGAGCTTTTACCGAAATCGCTTGTTAAAGTC
TGGAATCTCGAGATTGAAAACGGCGGAGGAGGAGATGGTGGTGATAGTAGTAGTAGTAGTCCTTCTCTTATCAGTAGCTCTGCACC
GGAGTTGAAAGAATGGAAACGACACATGGCTCAGTCGTTCGACAAACTCAGAAACTACTTCTGTCTGCAGTTTGTATTGAGCTTCA
TCTACTCTAGGGAAGGGCTAACACGGCTAGACGCGCTCATCTATTTAACAGAGACGCCAGATGATTTGCATCTTCCCTCATTACCG
TTTCAGGCATTGTTCTCTAAGCTGCAACAGTTGGCTATCATTGCTGGGGAGGTTCTGCTTGGGAAAGAGAAACTGCAAAAGATTCT
ACTGGCGAGACTAACCGAGACTGTTATAATCTGGCTGTCAAACGAGCAGGAGTTTTGGAGTGCGTTTGATGATGAGTCAACTCCAC
TTCAGCCGTCTGGTTTGCAACAGTTGATACTGGACATGAACTTCACAGTGGAGATAGCCAGGTTCGCGGGTTATCCATTTAAAGTG
GTGCAGAACCATGCGTCAGTGGTGATCAATAGAGCTATCAACATATTCTCTTCAAGAGGCATCAACCCACAAAGCTCACTCCCGAA
GGCGGAGTGGTTCACGGAAGCAGCTAAGTCAGCTATCAACAGGCTGCTAATGGGCTCTGACGAAGCTTCAGAAGCGGAAGAAGAAG
AAGAATATGAGTGTGAAGAAGAGGGAGAGGGAGACGGTCACATTGTCCTCCCTGAGATTGACGACGATGATGAACACTCAGAGTCC
CTAGAAACGTCTTCGCTTTCAACAATGGACTCGTTCGAATCGTTTGCCTCTGCGAGCATGGCTGACCTCGAGAGTCCCAGCTTCAC
CGATTCTGAGTCCTGAGTCCTGAGTCCTCACCAGTCTTGTCTTTTTTTTTTTGTTATATTAATGTAAGATGTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002892552 hypothetical protein ARALYDRAFT_471133 [Arabidopsis lyrata subsp. lyrata]14824e-162
NP_563863 uncharacterized protein [Arabidopsis thaliana]14799e-162
AAL06945 At1g10180/F14N23_6 [Arabidopsis thaliana]14726e-161
XP_002332135 predicted protein [Populus trichocarpa]9295e-098
ABN06034 hypothetical protein MtrDRAFT_AC149576g13v2 [Medicago truncatula]8776e-092

Swiss-Prot top hits (Blast detail)Scoree value
Q75JC9 Uncharacterized protein DDB_G02716701335e-007

TrEMBL top hits (Blast detail)Scoree value
Q9SY60 F14N23.614796e-162
Q940L2 At1g10180/F14N23_614724e-161
B9NA62 Predicted protein9294e-098
A2Q297 Putative uncharacterized protein8774e-092
B9ICL0 Predicted protein8722e-091

Arabidopsis top hits (Blast detail)Scoree value
AT1G10180.1 unknown protein15109e-168
AT5G49830.1 LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vps51/Vps67 (InterPro:IPR014812); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10385.1); Has 257 Blast hits to 210 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 61; Plants - 56; Viruses - 2; Other Eukaryotes - 5 (source: NCBI BLink).4462e-044
AT5G49830.2 EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vps51/Vps67 (InterPro:IPR014812); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10385.1).4462e-044
AT5G49830.3 EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vps51/Vps67 (InterPro:IPR014812); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10385.1).4462e-044
AT1G10385.1 FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Vps51/Vps67 (InterPro:IPR014812); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49830.1); Has 304 Blast hits to 243 proteins in 98 species: Archae - 0; Bacteria - 22; Metazoa - 141; Fungi - 74; Plants - 62; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).4418e-044

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
101  50%
 
81  50%

Unigene MembersMember information