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Information for unigene UN23953

FASTA Sequence
Unigene ID: UN23953Length: 1686 SSR 
GAAACTTCATAAAAAAACAAATAAAATAAAGAAAATTGTTCTCTCTTCTTCTTCTTCTTCGATTCTCCTGCATCAAATAATCTGTT
CAAAATCTCCGGCGATCTTCCGAAGAATCCCATTTTCCTAGGCGGGGGGAGGAATCCGACATTTTCTCAAAAATTCGAAAGGAAAC
AGCCATGGACGAGACCTATTCCTATCTAATCCAATCCCTGAAGAAACCCTCTTTCACAGAGACATTCGTCGACATCTTACTCTGCG
CTGTCCCGATTTGGCTCGCCGTCATGATCGGCCTCTTGATCGGATGGTCTTGGCGTCCGAGGTGGACCGGGTTGATCTACCTAGGG
TTCCGTTCTAAGCTTCGGTTCCTGTGGACCGCTCCTCCTGGCTTCGGCGCCCGTCGTCTTTGGCTCGCTTTCACCGCGCTCTCCGC
TTTCTCCGTTTGCCGCACCGTCTGGTCCAGGCGTGACTCCACGGCTAACAAATCGGCAAACGGTTCGGCGCCGACACGGCAGGGTC
CTGGAGAAGAGAGTCTTCAAAGCGATGAAACAGGGGCAAGCGATAACACAACGGTGAGAGAGGAGGAGATTGTGACAGAGAATGAT
CTAGAGCATTTGCTGCAGCTGCTTGAAGTTGGAAATGCGACCAGGGAATGGCAATCCATGATGGACAAGACTACTCCGAATATGAG
TTACCAGGCTTGGCGTCACGAGCCTGAGACAGGTCCTGTTATTTATCGCAGTCGAAGTGTGTTTGAAGATGCAACTCCAGATATTG
TTAGGGATTTCTTCTGGGATGATGAGTTTCGACCTAAATGGGACTTTATGCTTGCCAAGTTCAGAACTTTGGAAGAGGACACTCAG
ACAGGAACTATGATTGTCCAGTGGAGAAAAAAGTTTCCCTTTTTCTGTAGTGACCGAGAGTATATCATTGGCCGGAGAATATGGGA
GTCTGGAAACAAGTACTACTGTGTTACAAAGGGAGTTCCTTATCCAGCTTTACCAAAGCGTGATAAGCCTAGGCGTGTTGAGCTTT
ATTTCTCAAGTTGGGTTATCAGAGCAGTTGAATCTCGAAAAGGAGATGGACAGCCAACGGCTTGTGAAGTATCCCTAGTCCACTAC
GAAGACATGGGGATCCCTAAAGACGTAGCGAAGTTAGGCGTCCGTCATGGCATGTGGGGAGCCGTCAAGAAGCTAAACTCCGGTTT
AAGAGCCTACCAAACCGGTAGAAAGTCAGACTCGAGTCTATCCCGGATCGCCCAGATGGCAAGAATCACCACAGTGCTTGACATGG
ATTCTGCAGAAACATCTACTAGCGATGAAGACAGAAGCAGAGCAATGGGTTATGCGAGAAGGCAACGGGACCATTTGAGGATGGAC
TGGAAATGGGTCGTTGTAGGAGGTGTTGCATTGGCTTGTGGCCTTCACACTGGGGTCATTGGTAAAGCGTTACTTGCTGGAGCTGG
TCAGAGACTTGCTCGCCGGTGAATTGTCGTGTTGTTATTATTATTTTTCTATTGGTCCCTTGACTGAAAAAAAGAGAGAACGTATA
CATATAACTAACGGAAAAATTTATTCTTTCTTGCAACTCTGATGAGATGGGCATGTGGTTTTGATGGTGAACCATGTAGAGTAGTA
GCTTTAAGCTATGGTGTGAGATATGTATTTTATAAATTATATGAATTTACAT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_567433 SRPBCC ligand-binding domain-containing protein [Arabidopsis thaliana]20141e-223
XP_002870309 hypothetical protein ARALYDRAFT_493456 [Arabidopsis lyrata subsp. lyrata]19998e-222
XP_002885543 hypothetical protein ARALYDRAFT_319027 [Arabidopsis lyrata subsp. lyrata]17311e-190
NP_566722 SRPBCC ligand-binding domain-containing protein [Arabidopsis thaliana]16781e-184
AAL07016 unknown protein [Arabidopsis thaliana]16772e-184

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q944M2 AT4g14500/dl3290w20141e-223
Q9LS84 Membrane related protein-like16789e-185
Q93ZZ1 Putative uncharacterized protein At3g2308016771e-184
B9HKF0 Predicted protein15963e-175
B9RTE2 Phosphatidylcholine transfer protein, putative15812e-173

Arabidopsis top hits (Blast detail)Scoree value
AT4G14500.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23080.1); Has 257 Blast hits to 256 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 167; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).20253e-227
AT3G23080.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14500.1); Has 247 Blast hits to 246 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 162; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).16947e-189
AT3G23080.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14500.1); Has 247 Blast hits to 246 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 162; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).15934e-177
AT4G14500.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23080.1).11713e-128
AT1G64720.1 CP58659e-093

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
106  100%

Unigene MembersMember information