Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN23967

FASTA Sequence
Unigene ID: UN23967Length: 1603 SSR 
AATGATAATATTTGTTTATTTCAAATGCAGACATAACAACACAACACATTTGTATTTTGTGTATATTTACAAACCAGAAAACAGAG
CTCATGTCTTTTATTCCGACCATCATCAATATACAAATCCAATCACAAATCAGATGCTCTTAAAATCATATATATACATGAGTATA
TGACACATCTTGGATACAAGCTTCACTGCTTACACTTTGACAGAGAAGATCTCACTCAGGGAACTCCAAGTTCCCGACACAGCAAG
AACCACTCCCAGTCCCACTATCGCCATGTCCAGGCTCCATTGCTTCCACCCCATCTCTTCCTTGAACACCAGCAAATGAAACAAAG
CAGGTAACACAAACCCTAAGATGCAGCAAGTGCTGCTCCCCACCAATGACAAAAAATCTGTAAAGTTTGGCACAAAGAGAGCCACC
AGAGTCACTGCCAATACTAGCAGCCATCTCAGGCACGCAGAGTACATCCCACCCGAGAACCGCCTCTCTACTATCTCAAACACCGG
ATTCATCATCAAGGGGAAGGTGAAGAAGAGGTTGATGCAGAGTCCAAGCTGAACAATAGTGCTGATAAGTCCTGCCCCCAAGTTGG
CGGTGATGATGTCCATTGTGTCCTCACCAAAAGCCAAGTAACCTAAGAAACCAAAGGCTATGTATATGAAAGAGATGAATCCCATG
CCGAGTGCCAAGACTTTGCCGAACTTGTCCTTGTCTTTCATCTCCGATTCAAGAGGCAAGACCATTCCAACACCTTCAAAAGAATA
AACGGCCACGCCCATCCCATAGAAGAAGAGGGACATACCACCGAAGGCAACAACGTCAGGCCTTTGCTTGAGTATAATCATGGAAT
CCTCAACAATGACGACGGCCATAGCGGCAAGATCAACAAGGTCGGCGAAGATGCTGAGAGGAGCCAAGTGAGTGAGGGTCTTGATG
GAGTTGAGACCAAGCTGGAAGGGGAAGCATCCCCAGATGTAGAGACTCTTAGAGGAGACTCCGAGGAATTCAGAGCCGAGGCGTGT
AAACTGATGCCTGAGACTGGTGGGGGAATCAGGATCGAAAAGATTAGCTAGAGTAGTGCCGATGAAGATAAGATATCCGACACAAA
AGCCAGCTTGAGACAAAATAATAAAGAGGTCAACGACGAGCCTGCCGAGGGAACCGCAGACGGCAAAGCCAAGGTCACCAAAAGAG
CCGATCTTGGAGAAACCACCGCCGTTGAGAGAGTCGAGCTTGCGGCGGGTATAAACGAGGAGCATCATGCAGTGATGGGTCAAAAG
GGAGACGGAGAGGAGAAGGAGGACGCCCATGAGCCATCCGGTGCGCTTGAAGGCGTAAGGAAGACCAAGAACACCAGCGCCGACGA
CAGCAATGAAGATGTTGGCGAAGGTCTTGAACTGGCTAGAAAGAGGAGGCCCTTTGCCGAGAAGAGGCGTGTCCTCCCTAGAAGGT
GGTGGCATTTTAAGGGTATAAGAGGAGGAGGAGGAGGAGCTAGAAGCTTGCTTGTCAAACCCCATCTCAATTTCAATTTCAGAAGA
AGAGGGAATCGGAAACTCACTTGTTGATAGGAAGCACAAAGCTTCTCGCCGGGAG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002866789 hypothetical protein ARALYDRAFT_490589 [Arabidopsis lyrata subsp. lyrata]20812e-231
AAM65327 putative amino acid transport protein [Arabidopsis thaliana]20581e-228
NP_195538 Transmembrane amino acid transporter family protein [Arabidopsis thaliana]20543e-228
XP_002312799 aromatic and neutral amino acid transporter [Populus trichocarpa]15722e-172
XP_002328275 aromatic and neutral amino acid transporter [Populus trichocarpa]15679e-172

Swiss-Prot top hits (Blast detail)Scoree value
Q4V8B1 Proton-coupled amino acid transporter 34294e-041
Q4KL91 Proton-coupled amino acid transporter 44123e-039
Q811P0 Proton-coupled amino acid transporter 33416e-031
Q7Z2H8 Proton-coupled amino acid transporter 12994e-026
Q8K4D3 Proton-coupled amino acid transporter 12994e-026

TrEMBL top hits (Blast detail)Scoree value
Q8LAI4 Putative amino acid transport protein20588e-229
Q9SVG0 AT4g38250/F22I13_2020542e-228
B9HPX3 Aromatic and neutral amino acid transporter15722e-172
B9MZ05 Aromatic and neutral amino acid transporter15676e-172
Q8GXJ5 Putative uncharacterized protein13241e-143

Arabidopsis top hits (Blast detail)Scoree value
AT4G38250.1 amino acid transporter family protein20559e-231
AT2G42005.1 amino acid transporter family protein16193e-180
AT5G65990.1 amino acid transporter family protein13461e-148
AT3G11900.1 ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1); amino acid transmembrane transporter/ aromatic amino acid transmembrane transporter/ neutral amino acid transmembrane transporter3272e-030
AT3G28960.1 amino acid transporter family protein2538e-022

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
101  20%
 
122  40%
 
71  20%
 
211  20%

Unigene MembersMember information