RadishBase

| | | |

Information for unigene UN23977

FASTA Sequence

Unigene ID: UN23977	Length: 973	SSR
CATGGTAATAAAAAGAGGAGAACTAGGAAAACCACGTAATTTAATACACAAAAATATCAAATAAAATGTTTATTGTTCTAAAAAAT GATTATTTTCTTAGTTTATTATATAAAAACCCTTTTCAAACTCTATGATCCCCCTCCGTCAGTATTCGTTGACGACATGTAACTCA CCACGAGAGATGTCTCTTCCGTCGCAGCTGCGGGAACCACTTCAAACTGTCCTTTGCAAGTTTGACAAGTAACTTGCATAATCGTT GAGCTTATCTTCTTCATAGATTGTTCCTTTAAAAGCTTAGCTCTCTTAAGCTCAGTTTGTGCTTGTTGCCTTGTCTTCTTCGCATT CGCAAACTCATTTTCCGCTATCTCTCGTTGTCTCTTTGCTTCTCTTTTAGCTTCCTCCGCATAAGCTTTCTCCTTCATCGCTACAT TCATGATCTGTTCATTCGCTATTATTTCTTTTATGCGATCAAAATTGTTGTAGTGTTGATAGGATGATGATGGAGCAATGGAGAGG TTTAAGTTTGTGGCGTCATGACTATGATGATGATGATGAAGAGATGGTTCTTTAACTTGGTGTTGTTGGTTTTGTTGATTAGGGTT TATATTTGGCGTCAATGGAAGAAGCTGAAGTTCGAGGTTGAGATTTGATGAGTTGGTGAGAGCTAAAGGCGTTAAAGATGAGTTTT TGATATGAATTGGACGTCCTTCTAAAGGTAGAGGAGTCGCAACCACAGCCGCACCCCCGTAATTCGTTTCGGTAGATGGAGTGCTT GCCGTTGAGGCGGTTCTAGAGGAGCAGGCCGTGACAATGACGGCGGTTTGTGGCGGTGGCGGTGGTTCCTGGCGAACGTTCCTTAC AGAACAGTTATCTTGATGTTCAATAAAACTCTCCCCCCTAAAAGAAAAGAAAAACTTTAAAAAATGATTTCATATGATATAGGGTC AAAGTGGTTATATATTTTGGTAAACTT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
ACQ90589 putative C2H2 zinc finger protein [Eutrema halophilum]	1053	2e-112
NP_001077868 C2H2-like zinc finger protein [Arabidopsis thaliana]	1026	2e-109
XP_002875101 hypothetical protein ARALYDRAFT_484116 [Arabidopsis lyrata subsp. lyrata]	1007	4e-107
NP_178303 C2H2-like zinc finger protein [Arabidopsis thaliana]	1006	5e-107
AAD20087 putative C2H2-type zinc finger protein [Arabidopsis thaliana]	1006	5e-107

Swiss-Prot top hits	Score	e value
No hits found

TrEMBL top hits (Blast detail)	Score	e value
C7SI07 Putative C2H2 zinc finger protein	1053	1e-112
B3H5E9 Uncharacterized protein At2g01940.3	1026	2e-109
Q2V4B1 Putative C2H2-type zinc finger protein	1006	4e-107
Q9ZPT0 Putative C2H2-type zinc finger protein	1006	4e-107
A9PFF0 Putative uncharacterized protein	436	4e-041

Arabidopsis top hits (Blast detail)	Score	e value
AT2G01940.3 nucleic acid binding / transcription factor/ zinc ion binding	1026	1e-111
AT2G01940.1 nucleic acid binding / transcription factor/ zinc ion binding	1006	2e-109
AT2G01940.2 nucleic acid binding / transcription factor/ zinc ion binding	1006	2e-109
AT1G25250.1 AtIDD16 (Arabidopsis thaliana Indeterminate(ID)-Domain 16); nucleic acid binding / transcription factor/ zinc ion binding	237	3e-020
AT3G48550.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT2G01940.3); Has 40 Blast hits to 40 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).	197	1e-015

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	1			33%


8	2			67%

Unigene Members	Member information