RadishBase

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Information for unigene UN24006

FASTA Sequence

Unigene ID: UN24006	Length: 604	SSR
GAAAACAAGATAATAATAGAGTGCAAAGAGTAAATATTTGCGAACACTGACAAACCAGTTCTCAACTAAAAAGTATTAAAGGAGAG ATGGTCAGAGATAAAAGTCATACTCAATCCATCATAACAACAAAACAGAAAACAAAGAGATCAAAAGGTGACCAGAGTGAAATATA AAGAGAGGTGGTCTTGTTTGATGGCCGCTGCTGCTGCTGCTGCTTACAGCTTGTCTTCGAAGTCAGACAATGGAGTCATCTGCTCC TTCATACCCTTCCTCTTCCTGATGTCAGCCACCAGCGTTGAAGCCTGCGATCCTGCCTCCAGAGGGTCAGACGACATCATCTCCCA ATGATCAAACACACATTGTGGGAAGGCCTGTCCTGAGGTTGCTGCCCTAAGCTGACTCGAGAATCCGAATGACTTCACCACTGGCA AGTAAGCCTTGATGTTGTACAATGGTGTTCCTGGCCTCTGCATCTCCTCAAACACATGTCCACGCTTCTGATTCAGCACACTGTAG ATTCCACCAAGTGCTCCCTCTGGTGCTTGGATCTCCACCATGTAAACCGGCTCCAACAGTCTGGGCTTGGCAGTGAGCTGCGAGGC GT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002894554 hypothetical protein ARALYDRAFT_892631 [Arabidopsis lyrata subsp. lyrata]	632	5e-064
BAJ33766 unnamed protein product [Thellungiella halophila]	631	6e-064
XP_002882796 hypothetical protein ARALYDRAFT_318060 [Arabidopsis lyrata subsp. lyrata]	627	2e-063
NP_001046972 Os02g0519900 [Oryza sativa Japonica Group]	626	2e-063
NP_849818 elongation factor EF-2 [Arabidopsis thaliana]	626	2e-063

Swiss-Prot top hits (Blast detail)	Score	e value
O23755 Elongation factor 2	612	5e-063
P28996 Elongation factor 2	526	5e-053
P29691 Elongation factor 2	445	1e-043
P09445 Elongation factor 2	432	4e-042
P13639 Elongation factor 2	431	5e-042

TrEMBL top hits (Blast detail)	Score	e value
A2X5F3 Putative uncharacterized protein	626	2e-063
Q56WX9 Putative uncharacterized protein At1g56070	626	2e-063
Q56WY3 Putative uncharacterized protein At1g56070	626	2e-063
Q6H4L2 Elongation factor 2	626	2e-063
Q84R07 Putative elongation factor (Fragment)	626	2e-063

Arabidopsis top hits (Blast detail)	Score	e value
AT1G56070.1 LOS1; copper ion binding / translation elongation factor/ translation factor, nucleic acid binding	627	9e-066
AT3G12915.1 GTP binding / GTPase	627	9e-066
AT1G06220.2 MEE5 (MATERNAL EFFECT EMBRYO ARREST 5); GTP binding / GTPase/ translation elongation factor/ translation factor, nucleic acid binding	281	1e-025
AT1G06220.1 MEE5 (MATERNAL EFFECT EMBRYO ARREST 5); GTP binding / GTPase/ translation elongation factor/ translation factor, nucleic acid binding	281	1e-025
AT5G25230.1 elongation factor Tu family protein	275	6e-025

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	1			50%


8	1			50%

Unigene Members	Member information