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Information for unigene UN24017
| FASTA Sequence |
| Unigene ID: UN24017 | Length: 1030 |
SSR | | GATCTCAAAAGAAAAAAAAAGATTACATTCTCTCCTTCCGATCTAGAAAAACGAAAGAGATGGCCGGTGGTGGTTCGAAATCAACT
GCGCCCAAGGCGAGGAAGAGAGTGGATGTTGAAACCAAACCCGAAACCACCGCTAACAACAACAACAACATCAACACCTTACTTCG
CGCCAAAGACGGTAGCGCCTTCGTTCGATGTGAGGGATGCAACAAGAACGTAGCTGTTGCGCTTATCAGTATGCATAATTGTAGCC
TCGACGCCAAGATTCGAGTCAATCTCGAAGCTCAAGTTGTTGAGACACAAACCGAGGCTAAGAAGAAACCTGCTGAGAGGAAGAAG
TCAACATCTGATGAACCTAAGGCAAAGAGAGTAAGGAAGGCCAAGGATGAGAATAAGAAGAAGAGCTCTTCTTCCTCCTCTAACAA
GCCCAAGCGACCTCTTACTGCCTTCTTCATCTTCATGTCCGATTTCCGCAAAACTTTCAAAGAAGAGAATCCTGACGCTGGCGTTA
AGGATGTTGCAAAACAGGGTGGTGAAAAGTGGAAGTCTTTGGATGAGGAAGAGAAGAAAGTTTATTTGGATAAAGCTGCTGAACTA
AAGGTAGAGTATAACAAGTCACTTGAGAGCAGCAACGATGCTGATGAGGAAGAAGTGGATGAGGAGAAGGAAGCTACTGATGTTGA
TGATGCTGATGAGAAAAAGCAAACTGATGAGGCTGAGGAGAATGAAGGTGAAAACAAAGAGGCTGAAGGTAAAGAAGAGGAAGATG
AGATTTTGGATGACTACTAGACATATTAAAATCTTTCTTTGGTTTAATCTCAATGAAATGGATTCAACTCTTTATCCTGATGGTGC
ATTGTAAATTTTGAACTTTCATTAGTTATCTTAATATGGTTGGTGTGAGCATGTGAGGTTTCTGTAGTTCACTCCTTTTGTTTAGA
CAAGTATTGAAGGTTAATGTTTTTAGTTTCACCACTGTTGTAGAACTGAAAGCTATTGTTTGTTCTAGTCTTAGCGCTTTAATC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_568431 high-mobility group B6 protein [Arabidopsis thaliana] | 825 | 6e-086 |
| XP_002874129 hypothetical protein ARALYDRAFT_910356 [Arabidopsis lyrata subsp. lyrata] | 684 | 1e-069 |
| XP_002873936 hypothetical protein ARALYDRAFT_488801 [Arabidopsis lyrata subsp. lyrata] | 661 | 6e-067 |
| BAB09558 unnamed protein product [Arabidopsis thaliana] | 599 | 9e-060 |
| XP_002310906 high mobility group family [Populus trichocarpa] | 545 | 2e-053 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| B0CM99 High mobility group protein B1 | 232 | 1e-018 |
| B1MTB0 High mobility group protein B1 | 232 | 1e-018 |
| Q6YKA4 High mobility group protein B1 | 232 | 1e-018 |
| Q08IE6 High mobility group protein B1 | 232 | 1e-018 |
| P09429 High mobility group protein B1 | 232 | 1e-018 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LDF9 Putative uncharacterized protein | 825 | 4e-086 |
| Q9FHL6 Genomic DNA, chromosome 5, TAC clone:K19M13 | 599 | 6e-060 |
| A9PB77 High mobility group family | 545 | 1e-053 |
| B9RGI3 DNA-binding protein MNB1B, putative | 519 | 1e-050 |
| A5BH75 Putative uncharacterized protein | 500 | 2e-048 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G23420.1 HMGB6; transcription factor | 826 | 2e-088 |
| AT3G51880.1 HMGB1 (HIGH MOBILITY GROUP B 1); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor | 301 | 1e-027 |
| AT3G51880.3 HMGB1 (HIGH MOBILITY GROUP B 1); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor | 301 | 1e-027 |
| AT3G51880.2 HMGB1 (HIGH MOBILITY GROUP B 1); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor | 283 | 2e-025 |
| AT1G20693.1 HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor | 270 | 5e-024 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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