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Information for unigene UN24074
| FASTA Sequence |
| Unigene ID: UN24074 | Length: 1263 |
SSR | | TTTTTTGTTTTTTTCGATTCACAACATCTGTGTGCTCTGCTCTACTCCTCCTCCTCCGATTTCATACGTATTGAATCTGAAACGGA
AGCGCTTCTATGTTCAAAGCTTTAGTTTTGTTCTAGCTTCAGTTAACTGGAAGGGAGAGAGAGAGAGAGAGAGTTAAAGGAAACGA
CTTTGTTGTTGAAGGTCTGTATGGGTACCTAGGAGAAGAAGGAACTTTTTGTTGTGGAAGGCAAGGATCAGATGCATAGTATTAGC
TCCAACCCCGCTGGTGACCTTGGGAAGCAGCAGCAGGACAAGACTCCGGAGAAGCAGAGCGAGTTAGTAAATGAATCTGCCAAGGA
AGTGAACCACCTCACCATTGTTGTCTGCAATGGAGATTCAAGTGGGGCACGTGAAACCGTAGAATTGGCTCAGATCTATGGGCCAG
CAGCTGAGAGGGAAGAGTCCCCCAAAAAGGTTTGCTTGTCCAGAAACTCCAGCTCTCACGAGCAGTGTAGGGTTTGTCAGCAAGAG
AAAGAAGAGGCTTTGATAGAACTGGGGTGCCTATGTCGTGGTGGCCTTGCTAAATCCCATAGGTCATGCATAGATGCTTGGTTTCG
CACAAAAGGCTCTAATCAGTGCGAGATCTGCCAGGCAGTGGCTGTCAACGTGCCACCTCCAGAGACCCATCCAACTACAAATTACT
GGGTTTGGAGGATTGATCCCAGCTATAGACAAGAGCAGCGCGAGAGAGGATGTTTCAATCCTCTATGGGTAGCATTCTCAATTCTG
ATAGGCGGTCTAATGCTGGATGTGTTAATATCCATCACACTTGGTGTGTCTGCGCTTCCGGTTAACATAATCATTGGAGTGATAGT
GGTGCTAGGGCTAGGAACAGCACTAAGGCTGACATTGGAGTTCTGCTACGAGTGGAGCTTGAGAAGAGCGGTTCAGAGGGCAGTGC
AGAGGAGTGAAACAGCCTTTAATAACATTGCATATCCACCTGCCTTTTAAGAGATAAATGTCAAGCTGGGAACATCTTGTGTGTTA
TGTAAAAAAGTTGTGTGAAGACAAAAGTGTGATTGTTTTTACATGCAATGCTGAATTTGTTGGGAGCATCATCTTTTGTGTAGCTA
AAAACTTTTACAAAAGTTAGTATTAACCCCAAAATATTTGTCAGAATTTCTCTATATATGTCATTGAGTGAAGAAAACTCCATTTT
TGATCTACTAATAATAGGAATCCCAAACAATGTTGAAAAGTTATGAATTTTTGTAGAAA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002880184 hypothetical protein ARALYDRAFT_483690 [Arabidopsis lyrata subsp. lyrata] | 857 | 1e-089 |
| NP_566045 RING/U-box domain-containing protein [Arabidopsis thaliana] | 850 | 1e-088 |
| AAM64995 unknown [Arabidopsis thaliana] | 850 | 1e-088 |
| XP_002317039 predicted protein [Populus trichocarpa] | 748 | 6e-077 |
| XP_002518953 ubiquitin-protein ligase, putative [Ricinus communis] | 732 | 5e-075 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O64633 At2g45530 | 850 | 7e-089 |
| Q8LB32 Putative uncharacterized protein | 850 | 7e-089 |
| A9PC07 Predicted protein | 748 | 4e-077 |
| B9RYY4 Ubiquitin-protein ligase, putative | 732 | 3e-075 |
| B9GJI5 Predicted protein (Fragment) | 705 | 4e-072 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G45530.1 zinc finger (C3HC4-type RING finger) family protein | 851 | 3e-091 |
| AT2G37950.1 zinc finger (C3HC4-type RING finger) family protein | 152 | 3e-010 |
| AT1G14260.1 zinc finger (C3HC4-type RING finger) family protein | 146 | 2e-009 |
| AT1G14260.2 zinc finger (C3HC4-type RING finger) family protein | 146 | 2e-009 |
| AT5G05830.1 zinc finger (C3HC4-type RING finger) family protein | 146 | 2e-009 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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