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Information for unigene UN24089

FASTA Sequence
Unigene ID: UN24089Length: 1046 SSR 
GGATCGCCTCTCGATAAACCTAGCGCAGCAGTCTGCCATGAAAGGTCTGGAATTGAACGACGGTAGTGATGCAGAGATTCGAAAAA
GCAGCATTAGGAGAATTTCCGTTGAAGGATATGACACCTCGCTTCGTATCGAGGATGTCGATGAGGCTTTGAGAAAACATTTTGCT
TCATGTGGAAAAATAATTCATGTTTATATTCCCGGAAACAAGGAATGGACGATTCTCTGCAAATACGCCTTCGTTTATTTTAATGA
AGAAGATGAAGAAAAGGCGTTGAGGCTTGATGGACGTGACATGGGAGGACAGATTTTACAAATTAAGTCTTACCCGTTTCACGAAA
CTTACCTTAATGATGTCGTGGACCCGATGAAAGATGATAATTTCATTATGTACCAATTCAAGGTCGAGGTTGCGGGTTATGACAAT
TCCCTTCCTCTCGATGTTGTCGAGAAGGAGATAAAAGAATATTTCTCTGTAAATCGTCCTTTTGCTCACCACCACAAAACCTCTTC
TGCTGCTACCGAAATCAAATCTTACATTAATCTCACAGGTCAAGAGGCTGTAGACAAGGCTCTGGAACGTAGTGGACGTTCTGTGG
GAGGCTTGAGTCTTGTAGTTACTAAGGTTTTTCCAATTCAATATAACCCACCGCCGACTGGCTACATTCCCCCACGTATCTACAAC
ACCTTCACTCAGGAGCAGAAAGACAATCCTAATCTATATTACACTATTATTGAGAGACAGCAGAAGAAGAGTGAGCAGAAGAAGAG
TGAGACGAAGAAGAAGAAGAAGACTAAGACCAGGGTGGGAAATCAGAAGAAGAGGAGTGAGACCACGGAGGGAAATCAGAAGAAGA
AGAAGAGCAAGACCAAGGAGGGAAATCAGAAGAAAAAGGGAGTAGAAATCTGATTCTGAGGACAAGACATGTGGTTTTTGTGATAT
AACTTGTGTGCAATGCGACCCTTCTTTTCTTGTCTGGATACTTGAATGTTTTATGCTTGTATTTGCGTTGATCTTTAATAACCTAA
GTCGGATCAGATTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002883446 predicted protein [Arabidopsis lyrata subsp. lyrata]3085e-026
XP_002873094 predicted protein [Arabidopsis lyrata subsp. lyrata]2682e-021
XP_002893783 predicted protein [Arabidopsis lyrata subsp. lyrata]2494e-019
XP_002871038 predicted protein [Arabidopsis lyrata subsp. lyrata]2451e-018
XP_002873095 predicted protein [Arabidopsis lyrata subsp. lyrata]2314e-017

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q67YA0 Putative uncharacterized protein At5g035002197e-016
Q9LZD9 Putative uncharacterized protein F12E4_2501938e-013
Q9LZD6 Putative uncharacterized protein F12E4_280 (Fragment)1892e-012
Q9S755 MZB10.19 protein1802e-011
Q5BPG8 Putative uncharacterized protein1775e-011

Arabidopsis top hits (Blast detail)Scoree value
AT5G03495.1 nucleotide binding2194e-018
AT5G03480.1 nucleic acid binding / nucleotide binding1934e-015
AT3G09160.1 RNA recognition motif (RRM)-containing protein1801e-013
AT5G53700.1 INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: nucleic acid binding / nucleotide binding (TAIR:AT5G03480.1); Has 74 Blast hits to 54 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).1773e-013
AT5G05430.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, leaf; EXPRESSED DURING: LP.04 four leaves visible; BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT3G09160.1); Has 23 Blast hits to 21 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1173e-006

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
72  29%
 
115  71%

Unigene MembersMember information