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Information for unigene UN24106

FASTA Sequence
Unigene ID: UN24106Length: 1444 SSR 
GTAGAGGGAAAATCAGTTTTATACTCTTCTTGTACGTATTCTCTCTCTTTGCTTCTTAAAAATCACACAGTAGAAGAAAGAAAGAA
TAATAATAATAATAAGGGGGGAGAGAGAGAAGAAGAAGATAACGACGAGGAGAAGAAGAAGAAGGGCCCCAATATAGTCGTCTCCG
CCCCTGATTCTTTCTTCAACTTGATATTTCATTCAACTCGTATTAAAAAAGATAGAACCACCTGCATTTGGCTTTCCTGGACCAGT
TGATCGAACAATCATGGAATGAATGACTTGCTGTAGTAAATCATCCACACAAATCTCATCAGCTTAATAAATTTTTTATTTTGGAA
TGGCTGAGGCTGATCCAGACTCCTCAGATACGTCTGATCTCAAACCCATTACCAGCAGCGCCCCGCTCTTTAGCATCCCTCGCTTT
TTTGTGGCTAAAGACTCTGATGCAGTAGGGAGGAGCCCTACTTCTCCCCTTGATTTTTCACTCTTCGGTGGCCTCTTTAGCCCCAG
GTCTCCTCCAGCTGCTGCTGCTGCTCCCTCATCTCCCAGGTTTCGTAACAGATGGGCTTTTGACAAAGTCGGCCTCTCTCTTCTAA
GCTCCAGCGTTGGAGAAGAAGAAGGGGGGCATGAGGAGGGTTTATTCAACAACATCGTGCTTGCCCCTCAAATCAAGCCTAGGCTG
TTTGGTTCTTGTGTTAAATCCAATTCGTTGCCTAAAAACTATGCCGCCCCTTCCATGTCTTCTGACGCTGCGGAGGATCCTCTTCC
GTGTGATTCAATCACTGGTGTTGTGGAGGAACATGACTCTCCAAGGAGGTCGAGCTCATCTCCTGTGGATATAATCTCCAGCCAGG
CTTATTCTCGCTCGCTCTCTGCACGTGAGATGGCACTCTCCGAGGACTATACCTGTATCATTTCTCATGGGCCAAACCCGAAAACA
ACTCATATATTTGGTGACTGCATCCTGGATTGTGACCCCAAAGAGTTGGGAAGCAAGGATGAAACTGAGAAACCAGAAGGGGATGA
TGATGATTCTTTCACCGACAACCACATTCATATGCACGGCAGGGAGGCATCGTCAGCAGCAGGAGCAGCAGGGAAGGAAAGTGACA
AGGGAGGTGTTGAAGATTGTTTGGAGATATCGCCTGGATCAAGTTACAACGAGGATCTGTTTCCTATGGCCTCTTAACCCCAGGCA
AAGCTGTTCTCATTTTCTTGAGGCTTTTTTGGGAGAGATCATGTGTGAGTTTATTATTAGTGTTGTAAGGTTTTCGTTTTTTTTTG
GTGAGATTTTTGCAGGCGTGCTCTGAATAAAAGCTTGTTGTTGATCCAAGGGGGGTTGAGTTTTGGTGTGGCCTGATGCCCCCGGC
TCATCCTTTCTTTTGTTTGTACTACCATTGTATTTGTGACTTTATTATCATATTTGAAGGGGAACCAT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
AAM61114 unknown [Arabidopsis thaliana]4843e-046
NP_565224 uncharacterized protein [Arabidopsis thaliana]3052e-025
NP_974186 uncharacterized protein [Arabidopsis thaliana]2943e-024
BAH19642 AT1G79970 [Arabidopsis thaliana]2926e-024
XP_002299638 predicted protein [Populus trichocarpa]2272e-016

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q8LFZ7 Putative uncharacterized protein4842e-046
Q9CA98 At1g79970/F19K16.73051e-025
Q9SSD7 F18B13.5 protein2942e-024
B9DFX5 AT1G79970 protein2924e-024
B9GEL0 Predicted protein2271e-016

Arabidopsis top hits (Blast detail)Scoree value
AT1G79970.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: senescence-associated protein-related (TAIR:AT2G25690.2); Has 74 Blast hits to 74 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).5153e-052
AT1G79970.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: senescence-associated protein-related (TAIR:AT2G25690.2); Has 74 Blast hits to 74 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).5046e-051
AT2G25690.1 senescence-associated protein-related1498e-010
AT2G25690.2 senescence-associated protein-related1498e-010
AT3G22550.1 senescence-associated protein-related1417e-009

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
112  67%
 
201  33%

Unigene MembersMember information