RadishBase

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Information for unigene UN24126

FASTA Sequence

Unigene ID: UN24126	Length: 997	SSR
TCATAAAATTTGGTAATAACAACAACAACAACATAGAAGAAGACAAAACATTCAAAAGGATACAGTAAACCAAAAAGAAAAAAATA CAGAGCAACTACAGAAACTCCAGTCTTCCTCTTCTGGTAGACTTTTGGGGATCTCTTTGAGTAAAACATTCTTTTCACCTTCTGCT CAAACTTTACTATATAAAAATCTCTGACTAAACTCATTTACAGATGCAGAAAGAATGCAAACAAAAGAGGAGATTTTTGTTTCTTA ACTTGAAAAAAAAAAGTAGTGAGAAAAATACAACTGAATAGCTTTCCTTGCAGATTTTGGGGAACAATGTTTACATAGAAGCTCTG TCTGTTTTGACCATCAAACTCGTCTTTAAGAAAGAACGTTCTTGGAACCGAGTCTGATAACTTCTAACTGTGTCCTCCACGTTTGC CTTCAACTACCTTCTGGCTCTGAGTAATGGTACATTTGTATATTAAAAATAAGGTTCTAGTTCTTTTGATCGTTTTTAAGTTCCAG ACTGATTCACGAAACTTAGACCCAACTGTCTCTTGATATGGTCTGGAATCAGCTTGTTGACCAGCTCAGGTGAGGCACCAGCTACC TCTTGTTTGAAGTTGAAGAGTGGTGGGAAAGGACGTCCATTTGGTAAACGAGCATTTGGTTCTCTTAGCTCATCAAAGAAGGGATG TGCACAAGCTTCAAGCGCTGTGCATCTAAGACTTGGAGAGTACTGAAGCAGCCTTGATGCAAAATCAATGGCTTCTGGAGGCATCC TTTTGTGGAAAATCTTGTGCCAAGGATGTGCCTTTATCTGCGGAAACCTAAAGTCTGTGTAATGTGGATTCATACAACGGATCTCT TCTCTAGTTGGTGTACCAAGAACTTTGATGATTTCAACGAGGTGATCCACAGCATTTTCTCCAGGGAACAGTGGCTGACCAAGAAG AAGCTCGGCAAGACACACCAGCAGACAGATATCGATGGAAGTTGTGTACTC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002870026 hypothetical protein ARALYDRAFT_914806 [Arabidopsis lyrata subsp. lyrata]	821	2e-085
NP_193606 Shaggy-related protein kinase eta [Arabidopsis thaliana]	818	3e-085
BAH20356 AT4G18710 [Arabidopsis thaliana]	818	3e-085
BAH57105 AT4G18710 [Arabidopsis thaliana]	818	3e-085
BAJ33611 unnamed protein product [Thellungiella halophila]	815	8e-085

Swiss-Prot top hits (Blast detail)	Score	e value
Q39011 Shaggy-related protein kinase eta	818	2e-086
Q39010 Shaggy-related protein kinase zeta	731	2e-076
Q39012 Shaggy-related protein kinase iota	714	2e-074
Q8VZD5 Shaggy-related protein kinase epsilon	625	4e-064
Q39019 Shaggy-related protein kinase kappa	621	1e-063

TrEMBL top hits (Blast detail)	Score	e value
B9DHY9 AT4G18710 protein (Fragment)	818	2e-085
C0Z326 AT4G18710 protein	818	2e-085
B9S8B2 Glycogen synthase kinase-3 beta, putative	769	1e-079
P93774 Shaggy-like kinase (Fragment)	769	1e-079
B7FJ21 Putative uncharacterized protein	760	1e-078

Arabidopsis top hits (Blast detail)	Score	e value
AT4G18710.1 BIN2 (BRASSINOSTEROID-INSENSITIVE 2); glycogen synthase kinase 3/ kinase/ protein kinase	819	1e-087
AT2G30980.1 ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase	731	2e-077
AT1G06390.1 GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1); glycogen synthase kinase 3/ kinase	714	2e-075
AT1G06390.2 GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1); glycogen synthase kinase 3/ kinase	714	2e-075
AT5G14640.1 SK13 (SHAGGY-LIKE KINASE 13); ATP binding / protein kinase/ protein serine/threonine kinase	625	3e-065

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	4			80%


20	1			20%

Unigene Members	Member information