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Information for unigene UN24197

FASTA Sequence
Unigene ID: UN24197Length: 710 SSR 
GGCTTCCTCTCTCTCGCTCAATGTCGTTGAAACTCAACACCCGAATTTTGGCGGCGCCATCTCTGTTCCCAAATTCGAACCCAAGA
GGACCCACCGAGATTCGATTCTCCAACAGATGGGGCAAAGCTAACGCCGATCTCCTCTCTCTCTCTCTCTCTTGAATCAACGTTGC
AGAAGGGATCAAATTCGTTGTTGCGAGAAGGCAGGAGGAGGAGGAGGAGGTGATGTGTCAAAAAAAACGGGAGTGTGGTGGGACTT
GAACACGTGTCCTCTTCCGGCTGGTTTTGACCCTCGTTGGGTCCGTCCGTGTATAGAATCTGCCGTGGAAGAGGAGATTGGTTTTC
GTACTGAAGTCACCATATATGCAATGGGCAACCTAGAATACATCTCTATTGACCTCTTGGAAAAGATCTCTTCCTCTGGGATCATT
CTTACTCACTCCCCCTGCGTTGGGAAAGGCTTAATGTTATTTATGGACGACTGGTTTGGTGATGACTTTAGCAACCCACATCCTCC
GGGTTACGTAATGATCATCTCGGGTGATCAGAAAATGCTTGATCCTTGGCGTTTTCGGAGTTTTGGGCACACTACTTTTGTTGCAT
TTCCAAAAGGTGTTCGCCTACTTGCACCTCATGCCGAACTAAAATTTATTGGCGAACTGTTTGAGTACGTGTTTGCCAAACAGTTT
GTCTGGGAAACTTTATTGACTG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002883443 hypothetical protein ARALYDRAFT_342502 [Arabidopsis lyrata subsp. lyrata]2081e-014
XP_002872942 predicted protein [Arabidopsis lyrata subsp. lyrata]1792e-011
XP_002872943 predicted protein [Arabidopsis lyrata subsp. lyrata]1774e-011
XP_002889355 hypothetical protein ARALYDRAFT_887275 [Arabidopsis lyrata subsp. lyrata]1684e-010
XP_002892070 hypothetical protein ARALYDRAFT_887319 [Arabidopsis lyrata subsp. lyrata]1667e-010

Swiss-Prot top hits (Blast detail)Scoree value
Q9SL79 CRS2-associated factor 1, chloroplastic1323e-007

TrEMBL top hits (Blast detail)Scoree value
B9I6L5 Predicted protein (Fragment)1612e-009
B9I6L8 Predicted protein (Fragment)1593e-009
B8BJA7 Putative uncharacterized protein1532e-008
Q9LZI1 Putative uncharacterized protein F26K9_2801513e-008
Q53PU9 Expressed protein1504e-008

Arabidopsis top hits (Blast detail)Scoree value
AT5G35640.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G01355.1); Has 85 Blast hits to 83 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1565e-011
AT5G61180.1 unknown protein1521e-010
AT3G62850.1 zinc finger protein-related1512e-010
AT3G62200.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: EDA32 (embryo sac development arrest 32) (TAIR:AT3G62210.1); Has 3380 Blast hits to 2820 proteins in 272 species: Archae - 0; Bacteria - 93; Metazoa - 1555; Fungi - 720; Plants - 473; Viruses - 42; Other Eukaryotes - 497 (source: NCBI BLink).1361e-008
AT2G20020.1 CAF1; RNA splicing factor, transesterification mechanism1323e-008

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
72  100%

Unigene MembersMember information