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Information for unigene UN24202

FASTA Sequence
Unigene ID: UN24202Length: 1206  SNP
GGTCTGGGTGGAAGCTTGTCGTTGGTGATGTCTTCCGTGCTCCGTCCAATCCTTCGCTTCTGTGTGTCATGGTTGGTGACGGTGTT
CAGATTCTTGGCATGGCTGTTGTGACTATCTTGTTCGCTGCTCTTGGGTTCATGTCACCGGCTTCGCGTGGAACACTTATCACCGG
TATGCTCTTCTTCTACATGATCCTTGGCATTGCAGCTGGTTATGTTGCTGTTCGTCTCTGGAGGACGATTGGATGTGGTGAACACC
GTGGATGGATGTCTGTTGCATGGAAAGCTGCTTGCTTTTTCCCGGGTATTGCGTTTCTGATCCTCACAACGCTCAACTTCCTTCTC
TGGGGTAGCCACAGTACTGGAGCTATTCCTTTCTCTCTGTTTGTCATCCTCATCCTCCTGTGGTTCTGCATCTCGGTTCCTCTCAC
CCTCATCGGTGGTTACTTTGGAGCCAGGGCTCCTCACATTGAGTTCCCGGTCCGAACCAACCAGATTCCCAGGGAAATCCCAGCTC
AGAAATACCCGTCGTGGCTTCTAGTTCTTGGCGCTGGAACACTTCCTTTCGGGACCCTCTTCATCGAGCTGTTCTTCATCATGTCC
AGCATCTGGATGGGCCGTGTCTACTACGTCTTCGGCTTCCTGTTCGTTGTCATGATCCTTCTCGTTGTGGTGTGTGCTGAGGTCTC
TCTAGTGCTAACGTACATGCACTTGTGTGTGGAAGACTATAAATGGTGGTGGAAATCTTTCTTTGCGTCAGGATCCGTTGCTATCT
ACATATTCATCTACTCCATAAACTATCTCGTCTTCGACCTCAAAAACTTGAGTGGACCCGTTTCAGCGACTCTTTATCTGGGCTAC
TCTCTGTTCATGGTCCTGGCTATCATGCTCGCCACAGGTACTGTCGGTTTCCTCTCTTCCTTCTGGTTCGTGCACTACTTGTTCTC
TTCGGTGAAACTTGACTGAGGATCGGAGCCGGAGGATTACGGTTCAGAATGATCGTTTAAAGTTTTGAAGAAGAGAGTAATGTCGT
TTAAGCAAAGTCCATCTCATTGCTCCAAGTGTAAGGGTTCAATATTTTTTTCTTTTTAATGTCAGTCTCAAGGATTTGTTCATGTT
TCTTGTTTTCATCTTGTTACATCATTATGGGAATGCATCTGAACTTAGAAAATGTTTATTTTTAGTTCTATATTAAAAATGGATTT
TG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_001190420 endomembrane family protein 70 [Arabidopsis thaliana]16618e-183
AAM20600 putative protein [Arabidopsis thaliana]16618e-183
NP_198366 endomembrane family protein 70 [Arabidopsis thaliana]16618e-183
XP_002868407 predicted protein [Arabidopsis lyrata subsp. lyrata]16582e-182
XP_002523542 Endosomal P24A protein precursor, putative [Ricinus communis]16062e-176

Swiss-Prot top hits (Blast detail)Scoree value
P58021 Transmembrane 9 superfamily member 28343e-088
Q99805 Transmembrane 9 superfamily member 28334e-088
Q5R8Y6 Transmembrane 9 superfamily member 28334e-088
Q66HG5 Transmembrane 9 superfamily member 28334e-088
A5D7E2 Transmembrane 9 superfamily member 48031e-084

TrEMBL top hits (Blast detail)Scoree value
Q8L424 Putative uncharacterized protein At5g3516016616e-183
Q9FYQ8 Endosomal protein-like16616e-183
B9SC23 Endosomal P24A protein, putative16061e-176
A5ASY2 Putative uncharacterized protein16042e-176
B6ST61 Transmembrane 9 superfamily protein member 215504e-170

Arabidopsis top hits (Blast detail)Scoree value
AT5G35160.1 LOCATED IN: integral to membrane, Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12650.1); Has 1053 Blast hits to 1004 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 478; Fungi - 143; Plants - 250; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).16622e-185
AT4G12650.1 LOCATED IN: integral to membrane, Golgi apparatus, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35160.1); Has 983 Blast hits to 980 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 434; Fungi - 144; Plants - 228; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).13405e-148
AT2G24170.1 endomembrane protein 70, putative8737e-094
AT3G13772.1 endomembrane protein 70, putative8631e-092
AT1G55130.1 endomembrane protein 70, putative8575e-092

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
74  50%
 
201  13%
 
62  25%
 
91  13%

Unigene MembersMember information