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Information for unigene UN24202
FASTA Sequence |
Unigene ID: UN24202 | Length: 1206 |
| SNP | GGTCTGGGTGGAAGCTTGTCGTTGGTGATGTCTTCCGTGCTCCGTCCAATCCTTCGCTTCTGTGTGTCATGGTTGGTGACGGTGTT
CAGATTCTTGGCATGGCTGTTGTGACTATCTTGTTCGCTGCTCTTGGGTTCATGTCACCGGCTTCGCGTGGAACACTTATCACCGG
TATGCTCTTCTTCTACATGATCCTTGGCATTGCAGCTGGTTATGTTGCTGTTCGTCTCTGGAGGACGATTGGATGTGGTGAACACC
GTGGATGGATGTCTGTTGCATGGAAAGCTGCTTGCTTTTTCCCGGGTATTGCGTTTCTGATCCTCACAACGCTCAACTTCCTTCTC
TGGGGTAGCCACAGTACTGGAGCTATTCCTTTCTCTCTGTTTGTCATCCTCATCCTCCTGTGGTTCTGCATCTCGGTTCCTCTCAC
CCTCATCGGTGGTTACTTTGGAGCCAGGGCTCCTCACATTGAGTTCCCGGTCCGAACCAACCAGATTCCCAGGGAAATCCCAGCTC
AGAAATACCCGTCGTGGCTTCTAGTTCTTGGCGCTGGAACACTTCCTTTCGGGACCCTCTTCATCGAGCTGTTCTTCATCATGTCC
AGCATCTGGATGGGCCGTGTCTACTACGTCTTCGGCTTCCTGTTCGTTGTCATGATCCTTCTCGTTGTGGTGTGTGCTGAGGTCTC
TCTAGTGCTAACGTACATGCACTTGTGTGTGGAAGACTATAAATGGTGGTGGAAATCTTTCTTTGCGTCAGGATCCGTTGCTATCT
ACATATTCATCTACTCCATAAACTATCTCGTCTTCGACCTCAAAAACTTGAGTGGACCCGTTTCAGCGACTCTTTATCTGGGCTAC
TCTCTGTTCATGGTCCTGGCTATCATGCTCGCCACAGGTACTGTCGGTTTCCTCTCTTCCTTCTGGTTCGTGCACTACTTGTTCTC
TTCGGTGAAACTTGACTGAGGATCGGAGCCGGAGGATTACGGTTCAGAATGATCGTTTAAAGTTTTGAAGAAGAGAGTAATGTCGT
TTAAGCAAAGTCCATCTCATTGCTCCAAGTGTAAGGGTTCAATATTTTTTTCTTTTTAATGTCAGTCTCAAGGATTTGTTCATGTT
TCTTGTTTTCATCTTGTTACATCATTATGGGAATGCATCTGAACTTAGAAAATGTTTATTTTTAGTTCTATATTAAAAATGGATTT
TG
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GenBank top hits (Blast detail) | Score | e value |
NP_001190420 endomembrane family protein 70 [Arabidopsis thaliana] | 1661 | 8e-183 |
AAM20600 putative protein [Arabidopsis thaliana] | 1661 | 8e-183 |
NP_198366 endomembrane family protein 70 [Arabidopsis thaliana] | 1661 | 8e-183 |
XP_002868407 predicted protein [Arabidopsis lyrata subsp. lyrata] | 1658 | 2e-182 |
XP_002523542 Endosomal P24A protein precursor, putative [Ricinus communis] | 1606 | 2e-176 |
Swiss-Prot top hits (Blast detail) | Score | e value |
P58021 Transmembrane 9 superfamily member 2 | 834 | 3e-088 |
Q99805 Transmembrane 9 superfamily member 2 | 833 | 4e-088 |
Q5R8Y6 Transmembrane 9 superfamily member 2 | 833 | 4e-088 |
Q66HG5 Transmembrane 9 superfamily member 2 | 833 | 4e-088 |
A5D7E2 Transmembrane 9 superfamily member 4 | 803 | 1e-084 |
TrEMBL top hits (Blast detail) | Score | e value |
Q8L424 Putative uncharacterized protein At5g35160 | 1661 | 6e-183 |
Q9FYQ8 Endosomal protein-like | 1661 | 6e-183 |
B9SC23 Endosomal P24A protein, putative | 1606 | 1e-176 |
A5ASY2 Putative uncharacterized protein | 1604 | 2e-176 |
B6ST61 Transmembrane 9 superfamily protein member 2 | 1550 | 4e-170 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT5G35160.1 LOCATED IN: integral to membrane, Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12650.1); Has 1053 Blast hits to 1004 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 478; Fungi - 143; Plants - 250; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink). | 1662 | 2e-185 |
AT4G12650.1 LOCATED IN: integral to membrane, Golgi apparatus, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35160.1); Has 983 Blast hits to 980 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 434; Fungi - 144; Plants - 228; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink). | 1340 | 5e-148 |
AT2G24170.1 endomembrane protein 70, putative | 873 | 7e-094 |
AT3G13772.1 endomembrane protein 70, putative | 863 | 1e-092 |
AT1G55130.1 endomembrane protein 70, putative | 857 | 5e-092 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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