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Information for unigene UN24202
| FASTA Sequence |
| Unigene ID: UN24202 | Length: 1206 |
| SNP | GGTCTGGGTGGAAGCTTGTCGTTGGTGATGTCTTCCGTGCTCCGTCCAATCCTTCGCTTCTGTGTGTCATGGTTGGTGACGGTGTT
CAGATTCTTGGCATGGCTGTTGTGACTATCTTGTTCGCTGCTCTTGGGTTCATGTCACCGGCTTCGCGTGGAACACTTATCACCGG
TATGCTCTTCTTCTACATGATCCTTGGCATTGCAGCTGGTTATGTTGCTGTTCGTCTCTGGAGGACGATTGGATGTGGTGAACACC
GTGGATGGATGTCTGTTGCATGGAAAGCTGCTTGCTTTTTCCCGGGTATTGCGTTTCTGATCCTCACAACGCTCAACTTCCTTCTC
TGGGGTAGCCACAGTACTGGAGCTATTCCTTTCTCTCTGTTTGTCATCCTCATCCTCCTGTGGTTCTGCATCTCGGTTCCTCTCAC
CCTCATCGGTGGTTACTTTGGAGCCAGGGCTCCTCACATTGAGTTCCCGGTCCGAACCAACCAGATTCCCAGGGAAATCCCAGCTC
AGAAATACCCGTCGTGGCTTCTAGTTCTTGGCGCTGGAACACTTCCTTTCGGGACCCTCTTCATCGAGCTGTTCTTCATCATGTCC
AGCATCTGGATGGGCCGTGTCTACTACGTCTTCGGCTTCCTGTTCGTTGTCATGATCCTTCTCGTTGTGGTGTGTGCTGAGGTCTC
TCTAGTGCTAACGTACATGCACTTGTGTGTGGAAGACTATAAATGGTGGTGGAAATCTTTCTTTGCGTCAGGATCCGTTGCTATCT
ACATATTCATCTACTCCATAAACTATCTCGTCTTCGACCTCAAAAACTTGAGTGGACCCGTTTCAGCGACTCTTTATCTGGGCTAC
TCTCTGTTCATGGTCCTGGCTATCATGCTCGCCACAGGTACTGTCGGTTTCCTCTCTTCCTTCTGGTTCGTGCACTACTTGTTCTC
TTCGGTGAAACTTGACTGAGGATCGGAGCCGGAGGATTACGGTTCAGAATGATCGTTTAAAGTTTTGAAGAAGAGAGTAATGTCGT
TTAAGCAAAGTCCATCTCATTGCTCCAAGTGTAAGGGTTCAATATTTTTTTCTTTTTAATGTCAGTCTCAAGGATTTGTTCATGTT
TCTTGTTTTCATCTTGTTACATCATTATGGGAATGCATCTGAACTTAGAAAATGTTTATTTTTAGTTCTATATTAAAAATGGATTT
TG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_001190420 endomembrane family protein 70 [Arabidopsis thaliana] | 1661 | 8e-183 |
| AAM20600 putative protein [Arabidopsis thaliana] | 1661 | 8e-183 |
| NP_198366 endomembrane family protein 70 [Arabidopsis thaliana] | 1661 | 8e-183 |
| XP_002868407 predicted protein [Arabidopsis lyrata subsp. lyrata] | 1658 | 2e-182 |
| XP_002523542 Endosomal P24A protein precursor, putative [Ricinus communis] | 1606 | 2e-176 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P58021 Transmembrane 9 superfamily member 2 | 834 | 3e-088 |
| Q99805 Transmembrane 9 superfamily member 2 | 833 | 4e-088 |
| Q5R8Y6 Transmembrane 9 superfamily member 2 | 833 | 4e-088 |
| Q66HG5 Transmembrane 9 superfamily member 2 | 833 | 4e-088 |
| A5D7E2 Transmembrane 9 superfamily member 4 | 803 | 1e-084 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8L424 Putative uncharacterized protein At5g35160 | 1661 | 6e-183 |
| Q9FYQ8 Endosomal protein-like | 1661 | 6e-183 |
| B9SC23 Endosomal P24A protein, putative | 1606 | 1e-176 |
| A5ASY2 Putative uncharacterized protein | 1604 | 2e-176 |
| B6ST61 Transmembrane 9 superfamily protein member 2 | 1550 | 4e-170 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G35160.1 LOCATED IN: integral to membrane, Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12650.1); Has 1053 Blast hits to 1004 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 478; Fungi - 143; Plants - 250; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink). | 1662 | 2e-185 |
| AT4G12650.1 LOCATED IN: integral to membrane, Golgi apparatus, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35160.1); Has 983 Blast hits to 980 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 434; Fungi - 144; Plants - 228; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink). | 1340 | 5e-148 |
| AT2G24170.1 endomembrane protein 70, putative | 873 | 7e-094 |
| AT3G13772.1 endomembrane protein 70, putative | 863 | 1e-092 |
| AT1G55130.1 endomembrane protein 70, putative | 857 | 5e-092 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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