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Information for unigene UN24217
| FASTA Sequence |
| Unigene ID: UN24217 | Length: 1351 |
SSR | | GGGAGAGACAAAGAAATATCATCTCAGAGCTTCTTCTAGGGCTTCTACGCGACAACGGCTGCCAACTACTTCAGTTTCATAACTGA
ACAGGAATCATGAAGCCAGTCTTCTGTGGGAACTTTGAGTATGATGCGCGTGAGGGCGATCTTGAAAGACTATTCAGGAAGTACGG
AAGGGTTGAGAGGGTTGATATGAAAGCTGGGTTTGCCTTCGTGTACATGGAAGATGAGAGGGATGCTGAGGATGCTATCCGAGCCC
TTGACCGCATTGAATTTGGGCGCAAGGGACGCAGACTCCGTGTTGAGTGGACAAAGGGTGAGCGTGGAGGCGATAGAAGATCTGGT
GGTGGTGGTGGTGGTTCAAGGAGATCCTCATCCTTGAGGCCTTCCAAGACTCTGTTTGTGATCAACTTTGATGCGGATAATACTAG
GACCCGGGGTCTGGAGAGGCACTTTGAACCATATGGCAAAATTGTAAACGTTAGGATCAGGAGGAACTTTGCATTTATCCAGTACG
AGGAGCAAGAGGATGCAACCAGAGCACTTGATGCTACAAACAACAGTAAGCTGATGGATAAGGTGATCTCGGTGGAGTATGCAATG
AAAGATGATGATGCAAGAGGGAACGGCCACAGTCCCGAAAGACGCCGTGATAGGTCACCTGAAAGGAGAAGGAGATCACCTAGTCC
TTACAAGAGAGAGAGAGGGAGCCCTGATTATGGTCGAGGGGGTAGTCCTGTTGCTGCATACAAAAGGGAAAGGACTAGTCCTGACT
ATGGCAGAAGACGTAGCCCAAGTCCTTACAAGAGAACAAGGCGTAGTAGTCCGGAGTATGGTCGCGACCACCGCCACAGAGGCAAT
GAGAGCCCCCGGAGGAGGGAGAGAGCTGCAAGCCCCAGGTACAGTCGCAGTCCTGACAACAAGAGAGAGAGGGTGAGCCCTGATCG
CAGCCCGTTTAAGAAGGAAGGTTTGAAGAATGGAGATGGTGAAGTTGATAGCCCAAGGAGGGAGAGATCGAGGTCTAGCCCTGAGA
ATGGGCAAGTTGAAAGCCCTGGCTCTATAGGGAGAAGGGACAGTGATGGTGGCTACGATGGTGCAGATAGCCCCCCTATGCAGAAG
AGCCGGTCTCGTTCGCCTCCAGCTGAAGAGTGAATTGGAAAGGGGATACATCAAAAGTAGGATGATGTAGTCAAACACTATGTGTC
ATGTGTTGTGTTTAGTTTCTTTGCTATTTGAAACATTCGAACTGGGATCTCTTTTATTGTCGGATTGAAAAACTCTTCTCTTGTGT
GCTTAAAATGTGCCATGTTACTGAATTATTCGTTTTTAAATCGCATCTCACTTGAATTCCG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002869670 hypothetical protein ARALYDRAFT_492278 [Arabidopsis lyrata subsp. lyrata] | 1607 | 2e-176 |
| NP_194280 arginine/serine-rich-splicing factor RSP40 [Arabidopsis thaliana] | 1594 | 6e-175 |
| AAB18813 splicing factor At-SRp40 [Arabidopsis thaliana] | 1585 | 6e-174 |
| CAB81360 splicing factor At-SRp40 [Arabidopsis thaliana] | 1585 | 6e-174 |
| NP_001078447 arginine/serine-rich-splicing factor RSP40 [Arabidopsis thaliana] | 1409 | 2e-153 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P92965 Arginine/serine-rich-splicing factor RSP40 | 1594 | 2e-176 |
| P92966 Arginine/serine-rich-splicing factor RSP41 | 1256 | 4e-137 |
| P92964 Arginine/serine-rich-splicing factor RSP31 | 737 | 6e-077 |
| Q13242 Splicing factor, arginine/serine-rich 9 | 184 | 8e-013 |
| Q10021 Probable splicing factor, arginine/serine-rich 5 | 181 | 2e-012 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9M0K9 Splicing factor At-SRp40 (Fragment) | 1585 | 4e-174 |
| A8MRZ9 AT4G25500 protein | 1409 | 1e-153 |
| B9DH58 AT4G25500 protein | 1405 | 3e-153 |
| Q3E9W5 Putative uncharacterized protein At4g25500.2 | 1366 | 1e-148 |
| Q3E8C5 Putative uncharacterized protein At5g52040.2 | 1263 | 9e-137 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G25500.1 ATRSP35; RNA binding / nucleic acid binding / nucleotide binding | 1595 | 2e-177 |
| AT4G25500.3 ATRSP35; RNA binding / nucleic acid binding / nucleotide binding | 1410 | 5e-156 |
| AT4G25500.2 ATRSP35; RNA binding / nucleic acid binding / nucleotide binding | 1377 | 3e-152 |
| AT5G52040.2 ATRSP41; RNA binding / nucleic acid binding / nucleotide binding | 1264 | 4e-139 |
| AT5G52040.1 ATRSP41; RNA binding / nucleic acid binding / nucleotide binding | 1257 | 2e-138 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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