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Information for unigene UN24223
| FASTA Sequence |
| Unigene ID: UN24223 | Length: 939 |
| SNP | GTCTAAAATGATCTATTAAACATACTCTTTTAAAAGGAAAAGACGACGTTAAGTAGAAAGTGAGAATTACAGAAAATCGTTCGTTT
TGCCCAACAGGTATATGTATAGAATGAAATAGCAAAAAAGAAAAAAAGGAAGCTGGTTTATGTTTTAACCAAATCCGAATCCTTCG
CTTGCTTCATGGATTGCAAGCAGCAGCCTCTCCTGCAGATGTTCCTTAGACGGGTACTCTGGCAGATCTAACTGATTGAAACAGGT
ATGAGCAGACGGCAAGTGATTAGCGCTTCCATATGCCTTGTGGATCTGAAACTTCTGTGCCCCTGAAATTCCTTGAAGGGCACTAA
ATCCTTCCAGAGGAACCTTGGAGGTTCCAGTCACAAACTGCAATAGACGGGCTTTGTCTTCTTTGCTCAATCCCTGAACAACCTCC
CAGAACCACTGGATAACAGGGGATCCAGGACTGTACCCAGAATATTCAGTATTCGCCCTCAGGTTATCCAAGTCGATATCAGGAAG
ACCACTTATTAATAACTCCAGTTCCTTGTCGTTAAAAATTGATATTAGATCTTTAAGTATAAGTTCACTAAACCCTTCCAGGAATG
CATTTATCTGAGGACGAATGGCTGTGGTTAATCGATGCTCGGCGATTAGGTCTACATATTCATGCTTATTCTCCTCTGTAACTTTG
ATGTTCCGGCCTCCAGGGATCAGTTCATGGTCAGTCACCTCCGTTTTCTCATACAGTATTAGCTTTTCCTCATCAGCATCAACGCT
AAAAGTGAGATCTAGGACATCGCTAATATCATTCTCCAGCATCCATTTCAGGGCTTTATAGTAATCGGGATCTATAGCTTCAATAT
CATGGTACGTGACCTTAACTCCCAAGATATGCTTGTAAAAAGAACGAGTGAAATGGACGTCAAGTAGTTGACCATCAAA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002864007 predicted protein [Arabidopsis lyrata subsp. lyrata] | 1334 | 5e-145 |
| XP_002527362 E3 ubiquitin protein ligase upl2, putative [Ricinus communis] | 1289 | 8e-140 |
| XP_002301117 predicted protein [Populus trichocarpa] | 1284 | 3e-139 |
| XP_002283711 PREDICTED: hypothetical protein [Vitis vinifera] | 1265 | 5e-137 |
| CBI19293 unnamed protein product [Vitis vinifera] | 1265 | 5e-137 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8GY23 E3 ubiquitin-protein ligase UPL1 | 1150 | 4e-125 |
| Q8H0T4 E3 ubiquitin-protein ligase UPL2 | 1146 | 1e-124 |
| Q9P4Z1 E3 ubiquitin-protein ligase TOM1-like | 794 | 8e-084 |
| O13834 E3 ubiquitin-protein ligase ptr1 | 779 | 5e-082 |
| Q7Z6Z7 E3 ubiquitin-protein ligase HUWE1 | 735 | 6e-077 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9SMZ3 E3 ubiquitin protein ligase upl2, putative | 1289 | 5e-140 |
| B9GN81 Predicted protein | 1284 | 2e-139 |
| A5BAJ1 Putative uncharacterized protein | 1250 | 2e-135 |
| C5YNJ6 Putative uncharacterized protein Sb08g012560 | 1236 | 7e-134 |
| B8BPD0 Putative uncharacterized protein | 1223 | 2e-132 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G55860.1 UPL1 (UBIQUITIN-PROTEIN LIGASE 1); ubiquitin-protein ligase | 1151 | 3e-126 |
| AT1G70320.1 UPL2 (UBIQUITIN-PROTEIN LIGASE 2); ubiquitin-protein ligase | 1147 | 9e-126 |
| AT3G17205.1 UPL6 (UBIQUITIN PROTEIN LIGASE 6); ubiquitin-protein ligase | 430 | 1e-042 |
| AT3G17205.2 UPL6 (UBIQUITIN PROTEIN LIGASE 6); ubiquitin-protein ligase | 430 | 1e-042 |
| AT3G53090.1 UPL7; ubiquitin-protein ligase | 371 | 8e-036 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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