RadishBase

| | | |

Information for unigene UN24263

FASTA Sequence

Unigene ID: UN24263	Length: 833	SSR
AAAAAAATCTGATTATAAAGCAGGCAAAAATTTTACAGAGACGGACGATGATAGTGTTTGGGATCATGCGAAGGGTCGAGGAGTTT TGTGTGTGTGTGTGCGCGTTTAGTTGTTGTTCTAACAAGAGCATCCTCCTGATTGCTGTTGAGCCAAAGATGCATTTGCATTGGAA GATTTGAGATTGACATCAACCATGTCCTCTTGCTTCGTCGAAGACAGTGTTTCCATTCCTGGCAAAGCTGCTGCTATCTTACGGAA AAGCGCCTTAATGTTGAAGCCTGCTTTGGCACTGGTTTCGATAAACATAACATTAAGCTCACGAGCCTTAGCTTCTGCTTCCTCTA TCGACACTTGCCTTTTGTCCACAAGGTCGGTTTTATTTCCCACAAGTACAACAATGACATCACTACCACGCTCGGTCCTAACTTCA TCGATCCACTTAGTAGTGTTTAGGAAGGATTGCCTGCTTGCAACATCATAGACAATAACAGCAACAGAAGAGTCCCTAATGTAACT GGGAATAAGACTCCTGAACCTCTCTTGCCCAGCTGTATCCCATAGCTGCAGCCTGACAGTTCGGTCTTCAAGGTGCATTGTTTTCG ATAGAAAATCAATACCAATCGTGGCCTGGTAAGTGTTGTCAAATTTATCGTACATGAATCGAGTGATGATGCTCGTCTTTCCCACG GATTGATCTCCCAGAAACACCAGCTTATACTTTGCGAGCGCCGACACCGGAGCCATGATACCTCCCGCTCAAACTAGCCGGAACGA TCTGAGATACGCCGAGAAAGGAGGTTTCCAGTATATGTATCTGCCAGATTTCAAATTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_181989 Ras-related protein RABH1B [Arabidopsis thaliana]	1027	1e-109
XP_002526504 protein with unknown function [Ricinus communis]	989	4e-105
XP_002302484 predicted protein [Populus trichocarpa]	987	6e-105
XP_002266653 PREDICTED: hypothetical protein [Vitis vinifera]	983	2e-104
AAA74117 putative [Nicotiana tabacum]	980	4e-104

Swiss-Prot top hits (Blast detail)	Score	e value
O80501 Ras-related protein RABH1B	1027	7e-111
Q9SMR4 Ras-related protein RABH1C	798	2e-084
P20340 Ras-related protein Rab-6A	769	5e-081
P35279 Ras-related protein Rab-6A	769	5e-081
Q5RAV6 Ras-related protein Rab-6A	769	5e-081

TrEMBL top hits (Blast detail)	Score	e value
B9SKH4 Putative uncharacterized protein	989	3e-105
B9GP45 Predicted protein	987	4e-105
Q40525 Nt-rab6 protein	980	3e-104
Q8H4Q9 GTP-binding protein Rab6	968	7e-103
A5BUZ6 Putative uncharacterized protein	965	2e-102

Arabidopsis top hits (Blast detail)	Score	e value
AT2G44610.1 RAB6A; GTP binding / protein binding	1028	5e-112
AT5G10260.1 AtRABH1e (Arabidopsis Rab GTPase homolog H1e); GTP binding	906	7e-098
AT2G22290.1 ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D); GTP binding	865	4e-093
AT4G39890.1 AtRABH1c (Arabidopsis Rab GTPase homolog H1c); GTP binding / protein binding	799	2e-085
AT5G64990.1 AtRABH1a (Arabidopsis Rab GTPase homolog H1a); GTP binding	751	6e-080

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	1			33%


7	2			67%

Unigene Members	Member information