 |
Information for unigene UN24292
| FASTA Sequence |
| Unigene ID: UN24292 | Length: 839 |
SSR | | CGAGGAGAGAGATAATAGTAACAAGGAAACCGCCGTCGCCGGATCTGGCAGTGGTTCGTAGACGAACAACTACTTCCCGATCTTAG
AAAAGGAGTTTCTGTATATATATATATATATTTATTTATTTATCGGAAGGGTTCGGTTTTACGTTTCTGTTTTTGAGATTTCGAAA
AACCATGAGGAAGAAGCTCGACACTCGCTTCCCAGCTGCTCGTATTAAGAAGATTATGCAAGCTGATGAGGATGTTGGCAAGATCG
CTTTGGCAGTTCCTGTCTTAGTCTCGAAATCTTTGGAGTTGTTCTTACAAGACCTTTGCGATCGTACATATGAGATTACCCTCGAG
AGAGGAGCCAAAACCGTGAGCTCATTGCACCTGAAACATTGTGTGGAAAGATATAACGTGTTTGATTTTCTGAGGGAAGTTGTGAG
CAAGGTGCCTGACTACGGACAAGCGCAAGGGTCTGGTGATGTCACCATGGAGGATCGCAGCGTCTCCAAGAGAAGGAAGCCGATCA
GTGACGAAGCGAATGACAGCGACGAGGAAAATAAGAAGAGCAAAACACAAGAGGTTGGGAATGCTAAGCCGGGTGGCAGGGGTAGT
AGAGGTAGAGGACGAGGAAGGGGTCGTGGTGGACGAGCTGCCAGAGCAGCAGAAAGAGAGAATCTGAACCGCGAGATGGAACTTGA
GACCGCCATGGCGGAACAGCCACCTTCTCATCAAGACACTAACCACCAGATGCATGTCTCAGTGTCATCACCACAAGAGAACGAGA
AGAAAGATGTCGATGGAGCATCAAACGAAGACACCAAGCAGCAGCAGCAACAACTCCAAAGTCCA
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAJ34153 unnamed protein product [Thellungiella halophila] | 951 | 1e-100 |
| XP_002882777 hypothetical protein ARALYDRAFT_478603 [Arabidopsis lyrata subsp. lyrata] | 931 | 2e-098 |
| ABB89765 At3g12480-like protein [Boechera stricta] | 923 | 2e-097 |
| NP_187854 nuclear factor Y, subunit C11 [Arabidopsis thaliana] | 906 | 2e-095 |
| AAG51032 unknown protein; 69004-67516 [Arabidopsis thaliana] | 849 | 6e-089 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q54DA1 Dr1-associated corepressor homolog | 319 | 8e-029 |
| A0JPP1 Dr1-associated corepressor | 279 | 4e-024 |
| Q14919 Dr1-associated corepressor | 275 | 1e-023 |
| Q9D6N5 Dr1-associated corepressor | 274 | 1e-023 |
| Q2YDP3 Dr1-associated corepressor | 270 | 4e-023 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q1L0Q8 At3g12480-like protein | 923 | 1e-097 |
| Q9LHG0 At3g12480/MQC3.32 | 906 | 1e-095 |
| Q9C7A7 Putative uncharacterized protein T2E22.20 | 849 | 4e-089 |
| B9SHT5 Negative cofactor 2 transcriptional co-repressor, putative | 633 | 5e-064 |
| C6TAU6 Putative uncharacterized protein | 632 | 7e-064 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G12480.1 NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11); DNA binding / transcription factor | 906 | 7e-098 |
| AT5G19490.1 DNA binding / sequence-specific DNA binding | 438 | 1e-043 |
| AT5G63470.1 NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4); DNA binding / transcription factor | 147 | 7e-010 |
| AT5G63470.2 NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4); DNA binding / transcription factor | 147 | 7e-010 |
| AT3G48590.1 NF-YC1 (NUCLEAR FACTOR Y, SUBUNIT C1); DNA binding / transcription activator/ transcription factor | 146 | 9e-010 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
