 |
Information for unigene UN24299
| FASTA Sequence |
| Unigene ID: UN24299 | Length: 1694 |
SSR | | CTGAATCTGCTCTCAGGGCACCCGATGCTGTGATGGGTAACCGCTTTATCAAACTTTGGTGGGCAAATAGAGATAGTATTCCTGAT
AATGGCCTCTCCACTGGCAACGGTGCTTCTGTGAATGGTCGCGTTATGGCTGCTTCCGGAAGGCAGAACCAACTTGCTATTGCTGC
AGCATCGAAAAGCAACCATGTAACTTCTACTGCAAAGGGTCCTGCCTTCCGCGCCGGTGGAGCTCCATCATCATCTGAACAGCCTA
AGCCTGTGGGGGTCACAAGTGGTCCCAAGGTCACGCCGCTTCAGCAGAGAAAAGCAGACGATCTTGAGCGGTTGAAGGAGACACTT
CGGAAAAAGCAGGAAATGCTGGAGCAAAAGCGTGAGGAGTTCCGCAAAAAGTTGGCGAAACTTGAAAAAGGTACGGTTGTCAAGGG
CGAGGAAGCAGATGAGCCAGATGCCAAGCGCGTTAAAGTAGACACAGCCTCCAACTCCGATGCTGCAACCTCGTCACCAAAAACAG
TGTCATCCACAGATAAGAAGAAAGTGCCTATCCAGAAACCACTTTATTCTGCTAAAATAAGCACTGAAACGCCATCTCCCGATCCC
CAAAAACACTTAAAGCAAAGACCTTATCCGTTCACCACAAGTTTGAACACTCCTATGGTGAATAGGTATAAGTTGGACAACCGCCC
GACTACCATCAAAGTTGTTCCTCCTTTGCCAACCGGGTTAGCTGATGTTGCTGTCCTAAAGGAACATTTTTCATCTTATGGCGAAG
TCTCAAAAGTGGAACTCGAAGAGGATGCATCGACTGATGGTGGCAAGGATCAGGATGAAACAGATAAAGAAAACCGTAACCGTGCA
GCTTGTATCACGTTTGTGAAACGCAGCGCAGCCGAGAAAGCGTTTGCTAACGCAAAATGCTGGCAAGAAAACACGTTGCAGCTCAA
GTGGGTAACACGTCAAAGCAACAGAGAGAAAAATAGTAGCAGCAACAACAACAACAATCATCTCTCTGTTACTGGTGACCACCTTA
GCAGCAAAAACAAGTGCACTGCTTCCGTCTCTAATGACCCAAAACCAAAAGATGAACAAGTCAAAGCCTCGTCTACAGAAGAATCA
GGGAACACAAATGTCTCTGGAGACGACAAGACGTTGGATGAACGGGAGACCAAAGAAAGCGATAACGGCAACAATAAAAGTAACAG
CGAGTCTGTCGAAGGAGCTTCTGAAGCGGTTGCAGTGTCCGAAGCTGATGAAAAACAGATAAATGGTTAAGTTGGGTGAAGAAGAT
TCAAGTCAGTGAGGTAAATCTTGTTTGAGAAACATAAATCTTTATTTGTTTGAATCTGGCATTAGTGATCTTTTTTCCGTTTTAGG
CTTTTTAGCCAATTCGTGAGGCGTTAATATTTGTTGGTAGCAAAATATATCTAAAAGTTTTTTCCCCCTTTTTTGGATAGTAGAAT
GTGAAAAAGAGAGAAAAGAGAAGACAAGAAACAAGTGTATTGTTACATTTGGCCTTCCAAGAACAGTGGTTGGGTCTTTGGTTTTC
AGTTATTAGTTTCTATAACATTTTCAAGTTACTGTTGTATATGCATAGTTGGACTTGCACACTTGCTTCAGCCAGAGACGAAAAAT
AGTATGGAATCTACAAACGACACGCATTCTGGGAGATTACGCAATGTTATGTGGTGTAGA
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_189407 zinc finger CCCH domain-containing protein 41 [Arabidopsis thaliana] | 1603 | 7e-176 |
| AAL32652 Unknown protein [Arabidopsis thaliana] | 1603 | 7e-176 |
| XP_002877067 RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata] | 1578 | 5e-173 |
| BAF01755 hypothetical protein [Arabidopsis thaliana] | 855 | 4e-089 |
| XP_002273438 PREDICTED: hypothetical protein [Vitis vinifera] | 648 | 4e-065 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LVX1 Zinc finger CCCH domain-containing protein 41 | 1603 | 3e-177 |
| Q0JDM0 Zinc finger CCCH domain-containing protein 27 | 455 | 4e-044 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| C0SVD1 Putative uncharacterized protein At3g27700 (Fragment) | 1603 | 5e-176 |
| B9SF86 Rrm/rnp domain, putative | 625 | 1e-062 |
| B9IJM5 Predicted protein | 624 | 2e-062 |
| C5YEW2 Putative uncharacterized protein Sb06g014350 | 467 | 2e-044 |
| B7F489 cDNA clone:J023009A16, full insert sequence | 455 | 6e-043 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G27700.1 RNA recognition motif (RRM)-containing protein | 1603 | 2e-178 |
| AT3G27700.2 RNA recognition motif (RRM)-containing protein | 1603 | 2e-178 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
