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Information for unigene UN24353
| FASTA Sequence |
| Unigene ID: UN24353 | Length: 885 |
SSR | | TTTCAAGTTCATGGGTGGAGTTTCTTGGCCAACGGACCCCATCATCTTCTTCATCATCACCATCCTTTACCCACTTTCTCCCCAAT
TTATATTCTCTCTCATCTCTCTTAATTAATAACCGATCAAAACGTATTCTTCGATTTAATCATCTGGGTCTCCCTAAAAATCCCAC
CTTTCGATCTTTCTCTCCATGGGCAACATCAGCAGCGGAGGAGGCGACGGTAGACGCAGCCGTAGACAACGGCGGAGCAATTCCCT
TCCAACATCTTCTCCACCACAACAACCACCGCCACCACCTAATCGCATCGTCTTCGCCGCGGCTACACCGTACCCAAACCCTAATT
ACCAGTACCCTGGTTACTACCCTCCTCCTCCTCCTCAGGCACCTTACGACCATCACCACCACATCCACTATCCTCCTCCTCCGCAT
CCGTATCACCACCCTTACGGAAGATACCCTTACGGTGGTGGACCCATGATGCCTCCGCAGCTTCCCTGCGTCGAACATCAGAAAGC
CGTCACCATTCGTAACGACGTTAACCTCAAAAAGGAGTCTCTAAAACTCGAACCCGACCCGGATAACCCGGGTCGGTTCCTCGTCT
CCTTCACGTTTGATGCTACCGTCTCCGGAAGAATCACAATTATTTTCTTCGCTAAAGAAACCGAACAATGCGTCCTCACAGCTACA
AAGGAAGACACTTTACCACCGATCACCATGGATTTCGAGAAAGGCCTCGGTCAGAAAAGTTCAGACAGCCTCCCGGTTCGGGCATA
GATTTGTCGTTATTCGAAGAACGCCGAGCTCTTTAAGGCGGCAACGTTGGAGACTGATGTGTATCCGTTGGCGGTTAAGGCAGAAG
CAGCTGTTACTCCTTCAGGTGATGA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002884754 hypothetical protein ARALYDRAFT_478299 [Arabidopsis lyrata subsp. lyrata] | 681 | 2e-069 |
| XP_002280999 PREDICTED: hypothetical protein [Vitis vinifera] | 572 | 9e-057 |
| NP_566356 RING/U-box domain-containing protein [Arabidopsis thaliana] | 554 | 1e-054 |
| NP_850547 RING/U-box domain-containing protein [Arabidopsis thaliana] | 554 | 1e-054 |
| ABD32811 Zinc finger, RING-type [Medicago truncatula] | 532 | 4e-052 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LUI1 Leucine-rich repeat extensin-like protein 6 | 133 | 3e-007 |
| O48809 Leucine-rich repeat extensin-like protein 2 | 124 | 4e-006 |
| Q9T0K5 Leucine-rich repeat extensin-like protein 3 | 123 | 5e-006 |
| Q6MWG9 Formin-like protein 18 | 122 | 6e-006 |
| Q9SN46 Leucine-rich repeat extensin-like protein 5 | 121 | 8e-006 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q3EBA3 Putative uncharacterized protein At3g09770.2 | 554 | 8e-055 |
| Q9S752 Putative RING zinc finger protein | 554 | 8e-055 |
| Q2HV40 Zinc finger, RING-type | 532 | 3e-052 |
| Q8L8P7 Putative RING zinc finger protein | 528 | 8e-052 |
| Q9LYW5 At5g03200 | 524 | 2e-051 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G09770.1 zinc finger (C3HC4-type RING finger) family protein | 554 | 5e-057 |
| AT3G09770.2 zinc finger (C3HC4-type RING finger) family protein | 554 | 5e-057 |
| AT5G03200.1 zinc finger (C3HC4-type RING finger) family protein | 524 | 1e-053 |
| AT3G53410.1 zinc finger (C3HC4-type RING finger) family protein | 342 | 2e-032 |
| AT5G19080.1 zinc finger (C3HC4-type RING finger) family protein | 294 | 7e-027 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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