 |
Information for unigene UN24364
| FASTA Sequence |
| Unigene ID: UN24364 | Length: 1871 |
SSR | | TATCTTTAAACGTTTCAAACTTGAATTATCAGAAAAATGTAGACTTTCGTAACAAACATTGATTCTGAATCTTTGTAATAAATAAA
AAGGAACTTGTGTATCCCCACACTGTTTCTCACTCTCAAAAGTAGTATTATAAAAACCAATAATCGACTATGTCTCTGCTGGAAGC
GAACATTGAGCTTCTTCACATGTACGTAACGTATTGTTTGGGATTCTCTATCTAGCACCCCAGCCCCAGCCTTGCCTTTTGACGTT
CCCTTCCTCTCTTTCATCCGATACTAACTTCTGCTTTCTAAGCATCTCAACTTCAGCTTCAATGGATTGTCCCGACTCCAATGCTT
TCTGCAGTTCTGCTATCTGTGCCTCGAGTTTAAAGCATCTGGACCGCTCTGAGATAAGTTGACCTTGTACAGATTGGAGTTCTTGG
GATAGTTCAGCGTGCGTGCTATTAACTTCATCTATCTTTTCCCTGAGCTTCGAGTTTTCTACTTGGGTTTCTGCAACAGACGACTC
CAGAGTTCTTTTCTCTTCTTTAACGGAATCGACTTTGTTTCTAATATCACTCTCAGAGAAGCTATTTCCTGTTCCGTTGAGAGTTG
GGTTTGCAGGTGGTGGTGGAGGAAAATCTGAGCTATCTGACTTGGCTATGGCATAAGCAGCAGTGACTGAGGCTGCAGCTGCAGCG
GCTGCTGGTGACTTGAAGATTTTGGGAAGCGAGGATAATTCTCCTGGCTTGAGTCTCATGACGAATATATCATTGTTATACTTGCC
GTTATAGCCGCCAAAGGCTACTAAGATTTTCTCTCCAAATACTGATGCTGAGCACACACTAAGACCCTCACTAGCAAGTGGATGCC
TTGCTCCTACGTGGGTTGATGTAGACCAAACCAGCTTCGACATATTTAGCACAAGTGTCTCCAAACAACCGGTACTGTTATCACCG
CCCCCAACTATATACAAGTTTTCGTCAATGGTTATTCCCGCATGTCCTGCACGAGGAGTTACAACATCTCCCTGAACATGAGGCTG
TGACCACTCCATAGTTTGCAAGTCGAGGATGTGAAGATCACTGAAGAAGATAGAGTGAGAACAACCGCCAAAAACCAAGAGGTAAC
GATCGGAATGTGTAGCAGCTGTGTGGTCAAATCTGGGAACTGGGCGTGTCTGCGATGTCTCAACCACATCCCAAGTCATGGTCTCG
AGATCAAGAACATGGAGATCATTGAGCAGCCTCCTTTTCTTATCTTCCCCACCAAAAACAAAAACTCGGGAACCTACCAGCGTACT
GGAATGTCCACCACGTGATACCGGAACATTCCCCGAGGCATCGACGACTCCACAGAGATGCGTTTCCAAATCAATGAACCGCACTG
ACATGTTATCTGATGAATTCTTGGAGTATCCACCGATCAGAAGAAGCTTGTTCCCCCACTTAATCATGCGGTGGTCTGAAATAGCA
GGGAAAGCTTCCCCTAAGCTACCATCACCGTCTTCAGTTTTAAGTTTAAAACTAGACCAAGTCAAACTTCTAAGATCAGACACCTG
GAGATCAGATAAGTATCGGCCGTTACGGCTTCCACCGATAATGTAAAGCTTCTCATCAACAACCACTGCCGCATGCTTGTAGCGAG
CTGATGCTCGTGAGCCAGCAGCAACAGTGAGAGGTGTCCACTCATCGAAGGCGAGATTCGAATGCCAATCGCCGACGTCTATCTCT
TTCCTGATCTCTTCCATTGCCACACACACACACAAAGACTACCGTCACACAGCTCTCTCAGTATGAAGTCAGTAACCGGAATGGCG
GCGGTTTACAGAGCCGCCGGAGAAAGCGAGTGGTATCGGAGCCGGAGAATGGTGAAGAAATGTCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002873147 kelch repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | 1906 | 6e-211 |
| NP_196062 kelch repeat-containing protein [Arabidopsis thaliana] | 1897 | 6e-210 |
| AAL06496 AT5g04420/T32M21_20 [Arabidopsis thaliana] | 1890 | 4e-209 |
| XP_002316404 predicted protein [Populus trichocarpa] | 1716 | 6e-189 |
| XP_002264719 PREDICTED: hypothetical protein [Vitis vinifera] | 1669 | 2e-183 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9MA55 Acyl-CoA-binding domain-containing protein 4 | 1091 | 8e-118 |
| Q8RWD9 Acyl-CoA-binding domain-containing protein 5 | 887 | 3e-094 |
| P87061 Tip elongation aberrant protein 1 | 265 | 5e-022 |
| Q7M3S9 RING finger protein B | 263 | 8e-022 |
| P80197 Actin-fragmin kinase | 187 | 5e-013 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LZ83 AT5G04420 protein | 2237 | 2e-249 |
| Q945N7 AT5g04420/T32M21_20 | 2230 | 1e-248 |
| B9HUM5 Predicted protein | 1716 | 4e-189 |
| B9T305 Acyl-CoA binding protein, putative | 1588 | 3e-174 |
| Q6K9X9 Acyl-CoA binding protein-like | 1257 | 7e-136 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G04420.1 kelch repeat-containing protein | 2238 | 6e-252 |
| AT5G04420.2 kelch repeat-containing protein | 2238 | 6e-252 |
| AT5G04420.3 kelch repeat-containing protein | 2238 | 6e-252 |
| AT3G05420.1 ACBP4 (ACYL-COA BINDING PROTEIN 4); acyl-CoA binding | 1091 | 7e-119 |
| AT3G05420.2 ACBP4 (ACYL-COA BINDING PROTEIN 4); acyl-CoA binding | 1091 | 7e-119 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
