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Information for unigene UN24370

FASTA Sequence
Unigene ID: UN24370Length: 929  SNP
TTTTGTTCGCAAGCGAGCGAGCTAACTTTCTCTATGAAACATGAAAAACTTTTTATGGATTCTTTCAAAACAAAGAGGCAAAGATG
AAGTGTATACTCTTACGATGCGATGTTATCGGATTTTTTCCTTTTTGGATAAAGAGAAACAGAAGGAGCTAAGTAGGGAATGTGAT
TGTGAAAAGACCAAACAGGAATTTCAGAGATACAACATAAATAGAGGGAACTGGGAATGTAGCTCAGAGTTGGGGAGGCATGTCTA
TCTATTCATGAATCTTGTGCAGAGTCTTCAGTGCTGTCATTGCTAGGTAAACCGAATATCCTGAGATTACGGTCCATTGAACCGAC
TGCTACGTATTTGGCGTCGGGACCAAACTTAACACATGTTGCTCTACCTGTACCGGATAGATCAGGAAGTGTCTTGACTGGGTTCC
ATTCGGCTTTTACACTGGCCGTTTGGAATACTCTTATATCTGAAGCAGCAATGCCAAGATAAGATCCGCTATGGTCAAATTCCACC
GAGTTTGCATTTGGAAAGTCGAATGTTCGGAAGTTCTTTAGCTTGCGCAGGTCCCACAGTCTAACACCATCCAGCGCAGATGTCGC
GAGGAAATAACCATTTTCAGAAAATGATACAGATGTGATTTCACCAGTGTGGCCACCGAACTTCGCCACGTTTGCCTGACTCTTTA
CATCCCAAATCTTGACAATAGATTGAGCGGTACCAGTTCCAAGAATGAGACCATCAGGATGGAAAGCGGCAGCCGTGTAATCCACC
TTTTCGGAATCATCTGTGACCTGGGCAAGGCATAAACCAGAGGACATATCATAGAAGCACCACGTACTGTCAAGCGATGCTGACAC
AAAGTATTTGTTCGTCGCATGGACAGTGACAGCTCGCACCTCTGCAGTGTGATCTTTCAATGTATGTTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002889510 transducin family protein [Arabidopsis lyrata subsp. lyrata]10764e-115
NP_563708 Pre-mRNA-processing factor 19 [Arabidopsis thaliana]10532e-112
BAD94465 putative pre-mRNA splicing factor PRP19 [Arabidopsis thaliana]10532e-112
NP_001030958 Pre-mRNA-processing factor 19 [Arabidopsis thaliana]10504e-112
NP_850206 Pre-mRNA-processing factor 19-2 [Arabidopsis thaliana]9554e-101

Swiss-Prot top hits (Blast detail)Scoree value
Q94BR4 Pre-mRNA-processing factor 19 homolog 110554e-114
O22785 Pre-mRNA-processing factor 19 homolog 29552e-102
Q5ZMA2 Pre-mRNA-processing factor 194596e-045
Q08E38 Pre-mRNA-processing factor 194587e-045
Q9UMS4 Pre-mRNA-processing factor 194587e-045

TrEMBL top hits (Blast detail)Scoree value
Q2V4Q9 Putative uncharacterized protein At1g04510.210503e-112
B9HKU6 Predicted protein8863e-093
B9HST8 Predicted protein8755e-092
B9SQU0 Pre-mRNA-splicing factor, putative8585e-090
D5A9Q1 Putative uncharacterized protein8381e-087

Arabidopsis top hits (Blast detail)Scoree value
AT1G04510.1 transducin family protein / WD-40 repeat family protein10563e-115
AT1G04510.2 transducin family protein / WD-40 repeat family protein10537e-115
AT2G33340.1 nucleotide binding / ubiquitin-protein ligase9561e-103
AT2G33340.2 nucleotide binding / ubiquitin-protein ligase9561e-103
AT2G33340.3 nucleotide binding / ubiquitin-protein ligase7992e-085

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
83  33%
 
103  33%
 
112  22%
 
91  11%

Unigene MembersMember information