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Information for unigene UN24397

FASTA Sequence
Unigene ID: UN24397Length: 998 SSR 
GGGTCCCCTCCCTGCCTCCGGCCAATCTTAGCCCTTAAGCGAACTTTGCTCCTCCCAGGATTGCGATCGCCGATCAGTATCCCTTC
ATCGCCGCGATCGAACTCTTTAATCAATCGGAGTTAGAGAATCAGATGTTTGTCTGGTGAATCATGTCTGATATACCTTCTTGTTC
TAGCGGCAACAATACAAACAGCGATGATTCGAGTAACTTCGAATGTAACATCTGCTTTGACTTGGCTCAAGACCCCATTGTGACTC
TCTGTGGTCACTTGTTCTGTTGGCCTTGCTTGTACAAATGGCTCCATCTCCACTCCACCTCAAGTGAATGTCCCGTTTGTAAAGCC
GTGATCCAAGAAGACAGGTTGGTTCCTCTGTACGGTAGAGGCAAATCATCTACCGACCCTAGGTCCAAGTCCATTCCTGGAATCCA
AGTGCCGAACCGTCCATCCGGACAGAGACCCGAAACAGCGCAACCTCCCGAGCCAAACCATGGGTTTGGTCATCACGGTTTTGGTG
GGTTCATGGGAGGTTTTGCAGCTCCCGTTGCGAGTGCTCGGTTCGGTAACTTTACCGCGTTGCCTGCAGCGTTTGGAGGTTTGATA
CCTTCGTTGTTCAACCTCCATTTCCATGGGTTCCCTGATGCAGCCATGTATGGAGCTGCTGCTGCTGCTGCTTCTGGTGGTTTCCC
TCACGGGTTCTCAAACCCTTTCCATGGAGGACACTCGCATATGCATAGTTATCAACGGTACACGGGGAGACAAGGACAACAAGACT
ACCACTTGAAGGTATTGCTATGCTTTGTTTTTATCGTCGTTGTGTTTTCCCTCATCTTAAGCTAGTGAGGAAAATCGATTTGAGAG
CTTTTGCCTCCTCCACTTGTTTATTTGAGACCGGATTTTAATAAAACCCGGGAAAATTGTGCTATGACTTGGCTTGTATTGATCTT
GTGCTTAGCAAAATTGTTCATATGTTAATTAATAATACCTGTTTTTTCGAGG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_564078 RING/U-box domain-containing protein [Arabidopsis thaliana]11007e-118
XP_002893041 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]10836e-116
XP_002283526 PREDICTED: hypothetical protein isoform 3 [Vitis vinifera]8013e-083
ACU16582 unknown [Glycine max]7763e-080
XP_002326898 predicted protein [Populus trichocarpa]7753e-080

Swiss-Prot top hits (Blast detail)Scoree value
Q09463 RING finger protein 53754e-035
Q5ZIR9 RING finger protein 1853208e-029
Q91YT2 RING finger protein 1853135e-028
Q568Y3 RING finger protein 1853135e-028
Q96GF1 RING finger protein 1853119e-028

TrEMBL top hits (Blast detail)Scoree value
Q9LN67 At1g19310/F18O14_1411005e-118
A5BLE6 Putative uncharacterized protein8012e-083
C6T4H2 Putative uncharacterized protein (Fragment)7762e-080
B9MVF3 Predicted protein7752e-080
B9R7P4 Rnf5, putative7743e-080

Arabidopsis top hits (Blast detail)Scoree value
AT1G19310.1 zinc finger (C3HC4-type RING finger) family protein11092e-121
AT2G23780.1 zinc finger (C3HC4-type RING finger) family protein6334e-066
AT1G74990.1 zinc finger (C3HC4-type RING finger) family protein4247e-042
AT4G27470.1 zinc finger (C3HC4-type RING finger) family protein2562e-022
AT2G42030.1 zinc finger (C3HC4-type RING finger) family protein2436e-021

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  33%
 
112  33%
 
122  33%

Unigene MembersMember information