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Information for unigene UN24406

FASTA Sequence
Unigene ID: UN24406Length: 1339 SSR 
GACAATTGAATCGAATCGAACCGAACTATCTCGCACAGTTTTGTCTGTAGACAGACAGTACGGAGTTTGAACAACTGGGTTTTCCG
ACAATGTCGTCTCTCGAGGAGAAAAAGAAGAGGAAGAGGATGACTACAACCAAGAAGAAGAAGTTGCCGTCTGTGCTCCCGCCGAT
GCAGCAATCGACCTCAAACCCTTACCTTCCCGATGATTTGCTACTAAGCTGCTTTGCACGCGTCTTGAGACTCTACTATCCAACTC
TCTCACTCGTCTCCAAGACCTTGCCATCTCTCCTCGCTTCGCCTGAGCTTTACAAGACGCGCTCCTCTATAGGCCACACCTAGAGT
TGTATCTATGTGTGCCTACTGCTTCATCCCGACCCTATCCCTCGCTGGTACACACTCTGCCAGAAACCTTACCAAACCCTAACCAC
CAACACTACCAAGAAGTTGAAGAAGAAGAAGAAGTCAAGTGGGTATGCTTTAGCTAAACTCCCAACTCCCCATTCTGGTCCCGCGC
ACTGGTCAGGTTTCGTGACACTTGGTTCAGATATCTACAACATTGGGGGAACCGAGGAGCCCTCGTCTAGCGTCTTGATCTTTGAG
TCCCGGTCCAACACTTGGCGCGAAGGTCCAAGCATGCTGATAAAGCGGTGGCACCCAGTGGCCATTGTCCTTGATGGAAAGATATA
TGTAGCACGAGGATGCCAAGATTGCAATAAATCAAGTTGGATGGAGGTGTTCGATCCGAAAACACAATCTTGGGAGATTGTGTCAG
CCCTGGCGCTGAGATATGTGGCTGTAAATATCTAAGTAAAAGTGCAGGGTTTGATGGAAAGGTATACATATTTGGAGGCGGTAATG
GTTTGGCTTACAAACCTAAGGAAGGTCGATGGGAAAGGGTGGGATGGGAGATGGATACGAGTTGGCCATGGTATTTTTATACGGTG
ATTGACAACGTGCTCTACCAGTTCAATGGTGGGTTCAAATGGTATGACACCAAGGTAGGGCTCTGGAGGGGTTTGAAAGGTGTGAA
AGGACTGCCTAAGTTCCCTCGTTATATTGCGAGATTGGCGGATTATGGTGGGAAGATGGCTGTTTTTTGGGACAGGGTTTTGGCTT
CCACTGGATTTAAGGACAAGATGATCTTGTGTGCAGTGATTGCTCTTGAAAGGCGCGACAATGAAGAGATTTGGGGCAAGGTGGAA
TGGCATGACACAGTACTTACAGTTTCCAAGTCATGTAGGATTGACTATGCTCTTGCTGCTACCGTTTAATGAATTAACATATGTGA
CCGACTTGAATCTTTCTGTAGTCGTGGGCAATAGACATCATTTCGATTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002868914 hypothetical protein ARALYDRAFT_912422 [Arabidopsis lyrata subsp. lyrata]5929e-059
NP_001119398 F-box/kelch-repeat protein [Arabidopsis thaliana]5651e-055
XP_002863077 F-box/Kelch-repeat protein At5g49000 [Arabidopsis lyrata subsp. lyrata]5632e-055
XP_002868913 kelch repeat-containing F-box family protein [Arabidopsis lyrata subsp. lyrata]5542e-054
XP_002875998 hypothetical protein ARALYDRAFT_906299 [Arabidopsis lyrata subsp. lyrata]5524e-054

Swiss-Prot top hits (Blast detail)Scoree value
Q9SVA3 F-box/kelch-repeat protein At4g395506507e-067
Q9FI70 F-box/kelch-repeat protein At5g490005655e-057
Q9FFV4 Putative F-box/kelch-repeat protein At5g386805216e-052
Q9SVA1 F-box/kelch-repeat protein At4g395705191e-051
Q9LU49 F-box/kelch-repeat protein At5g512505127e-051

TrEMBL top hits (Blast detail)Scoree value
Q3ED92 Putative uncharacterized protein At1g19930.14232e-039
A0MFD0 Putative uncharacterized protein (Fragment)4124e-038
A0MFB6 Putative uncharacterized protein (Fragment)3963e-036
C6EMZ0 Kelch repeat-containing F-box protein3453e-030
A0MFD1 Putative uncharacterized protein (Fragment)3202e-027

Arabidopsis top hits (Blast detail)Scoree value
AT4G39550.1 kelch repeat-containing F-box family protein6506e-068
AT5G49000.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G39550.1); Has 5235 Blast hits to 3308 proteins in 165 species: Archae - 10; Bacteria - 167; Metazoa - 4114; Fungi - 13; Plants - 659; Viruses - 110; Other Eukaryotes - 162 (source: NCBI BLink).5654e-058
AT5G38680.1 kelch repeat-containing F-box family protein5215e-053
AT4G39570.1 kelch repeat-containing F-box family protein5199e-053
AT5G51250.1 kelch repeat-containing F-box family protein5126e-052

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
101  33%
 
92  67%

Unigene MembersMember information