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Information for unigene UN24420
| FASTA Sequence |
| Unigene ID: UN24420 | Length: 1384 |
| SNP | GGCACCAGTGACTTTGATCCAGACCTTGATGTCACACAACTTCCCAAGCGCTTTGGAAACTCCACACTCCTAGCCGAGTCAATTCC
TATTGCAGAGTTCCAAGGTCGCCCATTGGCAGACCACCCTGCGGTCAAGTATGGCCGTCCTCCTGGAGCCCTTAGAGTCCCCCGTG
ACCCACTTGATGCCACAACTGTCGCAGAGTCTGTTTCTGTAATCTCTTGTTGGTATGAGGATAAAACCGAGTGGGGAGACAGAGTC
GGATGGATTTATGGGTCGGTGACAGAGGAGGTTGTCACAGGGTACCGCATGCATAATCGTGGATGGCGCTCTGTTTACTGCATCAC
CAAACGAGATTCTTTCCGCGGTTCTGCACCCATTAATCTCACAGATCGCCTTCACCAAGTCTTGCGATGGGCCACCGGCTCTGTCG
AGATATTCTTCTCTAGAAACAACGCCATCCTTGCCTCAAAACGTCTCAAGTTCCTCCAACGCCTTGCATACCTAAATGTCGGAATA
TATCCCTTCACCTCTTTGTTTCTCATCCTCTATTGTTTTCTTCCAGCTTTCTCTCTTTTCTCTGGACAGTTTATAGTACGAACACT
TAGTATCTCCTTCTTAGTTTACCTCCTTTTGATTACCATCTGTTTGATTGGCTTGGCGGTTCTGGAGGTCAAGTGGTCCGGCATCG
AACTAGAAGAATGGTGGAGGAATGAACAGTGGTGGCTTATCTCCGGAACTAGCTCTCACCTTTATGCTGTAGTCCAAGGAGTCCTC
AAAGTTATTGCAGGGATCGAGATCTCTTTTACCTTAACCTCTAAATCCGGGGGAGATGACAATGATGATATCTACGCAGATTTATA
CATAGTGAAATGGTCATCTCTAATGATACCACCCATTGTGATAGCAATGGTAAACATAATAGCAATTGTGGTAGCGTTTGTCAGGA
CGATATACCAAGCGGTGCCACAATGGAGCAAATTGATAGGAGGAGCTTTTTTCAGCTTCTGGGTGTTAGCACATTTGTACCCTTTT
GCAAAAGGATTAATGGGAAGGAGAGGCAAGACTCCAACAATAGTTTTTGTGTGGGCAGGTCTAATTGCCATCACTATCTCTCTACT
ATGGACGGCTATTAATCCTAACACCGGACCTGTCGCTGCTGCTGAAGGTGTTGGAGGTGGTGGATTTCAATTTCCTTAAAACATTT
ACAGTATATATATGAGTAGAGTTTTCTAAAACCTAATTTAATTACAACAATAATACACTTTCCTATTTCCTTTTTCTTGTTTATTT
CTTTCTTTGGTTGTAAATTTTCACTGAACAATATTTAGATTTTAATATCTCATGATTGTAAAATGCAATTATCAATCAACTTGTTA
CTTGTAGC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002868836 hypothetical protein ARALYDRAFT_490578 [Arabidopsis lyrata subsp. lyrata] | 2067 | 8e-230 |
| AAO64152 unknown protein [Arabidopsis thaliana] | 2061 | 4e-229 |
| NP_195532 cellulose synthase-like protein D4 [Arabidopsis thaliana] | 2061 | 4e-229 |
| XP_002313568 predicted protein [Populus trichocarpa] | 1803 | 3e-199 |
| XP_002514401 cellulose synthase, putative [Ricinus communis] | 1778 | 3e-196 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SZL9 Cellulose synthase-like protein D4 | 2061 | 2e-230 |
| A2YU42 Cellulose synthase-like protein D2 | 1674 | 1e-185 |
| Q9LHZ7 Cellulose synthase-like protein D2 | 1674 | 1e-185 |
| Q9M9M4 Cellulose synthase-like protein D3 | 1660 | 5e-184 |
| Q9LFL0 Cellulose synthase-like protein D2 | 1658 | 9e-184 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9HPM1 Predicted protein | 1803 | 2e-199 |
| B9RKY2 Cellulose synthase, putative | 1778 | 2e-196 |
| B9MZ28 Predicted protein | 1773 | 7e-196 |
| Q93XQ0 Cellulose synthase D-like protein | 1741 | 4e-192 |
| C5Z2Q3 Putative uncharacterized protein Sb10g000980 | 1676 | 1e-184 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G38190.1 ATCSLD4; cellulose synthase/ transferase, transferring glycosyl groups | 2062 | 1e-231 |
| AT3G03050.1 CSLD3 (CELLULOSE SYNTHASE-LIKE D3); cellulose synthase/ transferase, transferring glycosyl groups | 1660 | 5e-185 |
| AT5G16910.1 CSLD2 (CELLULOSE-SYNTHASE LIKE D2); cellulose synthase/ transferase, transferring glycosyl groups | 1658 | 8e-185 |
| AT2G33100.1 ATCSLD1; cellulose synthase/ transferase, transferring glycosyl groups | 1553 | 1e-172 |
| AT1G02730.1 ATCSLD5; 1,4-beta-D-xylan synthase/ cellulose synthase | 1478 | 6e-164 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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