Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN24426

FASTA Sequence
Unigene ID: UN24426Length: 1062 SSRSNP
GGAGATTTCATGCTTTATGTTTGAAAGACAGTGGCGTCTTATATGAGGATCCTTATATCCAGATCGGCATCAAAGCTGAATGGAGA
GGACACCATGGGAGACTTGTTCTCTTCTTGGGAAACAAGAGCACTTCTCCACTTACATCAGTCCAAGCTCTAATACTACCCCCTGC
CCATTTAAAATTAGAGCTGTCTCCAGTACCTGATACGATTCCTCCTCGAGCACAGGTACAATCTCCTCTTGAAGTGATGAACATCC
GCCCTAGCAGAGATGTCGCGGTTTTGGATTTCTCCTACAAGCTTGGTACAATCGTGGTTGGTGCCAAACTGCGCATCCCAGCAGTT
ATAAATAAGTTTCTTCAACCTCTTCAATTGACAACTGAAGAGTTCTTCCCGCAATGGAGAGCACTTTCAGGGCCACCCTTGAAACT
TCAGGAAGTTGTAAGAGGTGTAAGACCTCTAGCACTTCCGGAAATGGCGAACTTGTTCAACAGTTTCCGGGTGACGATATGCCCTG
GGCTTGATCCGAACCCTAATAATCTAGTGGCAAGCACAACCTTTTACTCTGATACTACAGGAGCCATGCTCTGTTTGGCAAGAATT
GAAACAGACCCAGCAGACAGAACCCAGCTACGAATGACAGTAGGCTCAGGAGATCCTACCCTTACATTTGAGTTGAAAGAATTTAT
CAAGGAACAGCTAATTGTTATGCCAATGGGATCTCGAGCTCTAGTTCCAGCAGCAGCACCACCACCACCACCACAGTAGCTCAACC
GCCTAGCCCAGCGGCTTTAGCTGATGATCCAGGAGCTATGCTTGCGGGCTTACTATAAGTTCATTGGGTAAGAGAATACTTCTTGC
AGATGTCGAGTGAAAGTTATTTTTTTTTCGTGAGTTCAGGTGGTTGTATCAAAGCTTATTCTTGTTCCTAAACATTATTTTCAATC
TGTTTCTCCGCGATGATTTATTTGAGGTCTTTGAAACTTAATGTATAGAGAAACAGAAATTCACAGTCGTTTAACTCAATTTTAAG
TTTGGTATTTAGTAGGTTGAATATTGAGAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_197670 AP-2 complex subunit alpha-2 [Arabidopsis thaliana]12262e-132
BAB10137 alpha-adaptin C homolog [Arabidopsis thaliana]12262e-132
XP_002874085 hypothetical protein ARALYDRAFT_489126 [Arabidopsis lyrata subsp. lyrata]12153e-131
NP_197669 AP-2 complex subunit alpha-1 [Arabidopsis thaliana]12145e-131
BAB11683 alpha-adaptin [Arabidopsis thaliana]12145e-131

Swiss-Prot top hits (Blast detail)Scoree value
Q86KI1 AP-2 complex subunit alpha-23612e-033
P91926 AP-2 complex subunit alpha3101e-027
Q29N38 AP-2 complex subunit alpha3092e-027
P18484 AP-2 complex subunit alpha-22894e-025
Q0VCK5 AP-2 complex subunit alpha-22876e-025

TrEMBL top hits (Blast detail)Scoree value
Q8LPK4 Alpha-adaptin C-like protein12261e-132
Q9FGT0 Alpha-adaptin C homolog12261e-132
C0Z243 AT5G22770 protein12143e-131
Q8LPL6 Alpha-adaptin12143e-131
Q9FNI4 Alpha-adaptin12143e-131

Arabidopsis top hits (Blast detail)Scoree value
AT5G22780.1 adaptin family protein12267e-135
AT5G22770.1 alpha-ADR (alpha-adaptin); binding / protein binding / protein transporter12142e-133
AT5G22770.3 alpha-ADR (alpha-adaptin); binding / protein binding / protein transporter12142e-133
AT5G22770.2 alpha-ADR (alpha-adaptin); binding / protein binding / protein transporter12142e-133

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
121  9%
 
102  18%
 
72  18%
 
94  36%
 
112  18%

Unigene MembersMember information