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Information for unigene UN24483

FASTA Sequence
Unigene ID: UN24483Length: 1036 SSR 
GCAAAGCAGAAACGTATTTATTTTGAAGGTAATATTTTTATAAGTTTAACTCCTTGACAGCTTGACTTAGAACAAGTTAAATACGC
TAGGTAGCAGGTATATAACTTGTTGACATCTCAGAGTTTTCGGAAGAAAATATATAAAAACAAAGATCAACACACATTCTTGATAA
TTAGTTTTGAGGAGGGGTTTTCTTGGATTGTCTTGTCTCAGGAGGTCCAATGAACAAGCCAGTCTCCACTTCCATGTTGTCATTTT
CATCCATGTTCACTTCTGATGATGATAAGGTTGATGATGATGATGCTACTACTATTGCTCCCATCCCATGCAACTTCTCCTTCAGT
TCTTTATTTTCATTGATGAGATTCCTCTCCTCTTCCTTCAACTTCTCAATTTCTTCACGGAGTAATTGGTACTTCTTGGCTCTTAT
CCTGGTCAAGCCCCGTTCCAACTGATTCTCTAGTTGTTGCAGCTCCTCAATAGAACATGCATCAATACCTTCTCCAAGCAAATTCG
TTTAGATATCTCTAGCTGCTCAATCTTTTTTGTCAAACCATATGTTTCGCCTCTTGATTGCTGAGAATTATCATCTCTCTTGTGGT
TAATTCCAATTTCTTTGACTCGTCTCTGGTATCGTTCTATTGTTTTTGCCATACCAGAGCTAGAGAACTCATAGAGTTTGGAACTT
GGAGAGAAGATGATCAAAGCAACTTCGGCATCACAAAGGACTGATAACTCGAAAGCTTTCTTCAAAAGTCCATTTCTTCTCTTGGA
GAAGGTCACTTGCCTGCTCGTTGCGTTCTCTATCCTCTTCATCTCAGTCTTTCCCCTCACCATCCTTATTTAATCCTCTTGATTTG
TATGTGTATGCGCTTGGATTGATGTGTTTTTCTATTTGTGTGTGTATATATATATATATTTGTATCTTATCTATCCGTCGAAATAG
ATAAAGAGAAGAAGAGAGATTTTGGGAAGAGGGTGTGTGATACAGATTTCTGGGAACTTCTCTCAGAAACCCTAGATTTATCATGA
ATCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002867741 hypothetical protein ARALYDRAFT_492570 [Arabidopsis lyrata subsp. lyrata]4887e-047
NP_194026 agamous-like MADS-box protein AGL19 [Arabidopsis thaliana]4806e-046
XP_002304455 MIKC mads-box transcription factor [Populus trichocarpa]3883e-035
ABF51526 MADS box transcription factor [Populus tomentosa]3793e-034
CAL36575 deficiens H24 homologue [Misopates orontium]3775e-034

Swiss-Prot top hits (Blast detail)Scoree value
O82743 Agamous-like MADS-box protein AGL194802e-047
Q38838 Agamous-like MADS-box protein AGL144444e-043
O64645 MADS-box protein SOC13566e-033
Q9XJ60 MADS-box transcription factor 503422e-031
A2Z9Q7 MADS-box transcription factor 563298e-030

TrEMBL top hits (Blast detail)Scoree value
B9GW46 MIKC mads-box transcription factor3882e-035
C3PTE7 MADS box transcription factor3792e-034
B9GPT3 MIKC mads-box transcription factor SOC13773e-034
D1MDP7 Suppressor of overexpression of CO 13773e-034
Q0JRV9 Deficiens H24 homologue3773e-034

Arabidopsis top hits (Blast detail)Scoree value
AT4G22950.1 AGL19 (AGAMOUS-LIKE 19); transcription factor4802e-048
AT4G11880.1 AGL14 (agamous-like 14); DNA binding / transcription factor4443e-044
AT2G45660.1 AGL20 (AGAMOUS-LIKE 20); transcription factor3565e-034
AT5G62165.1 AGL42 (AGAMOUS LIKE 42); transcription factor3216e-030
AT5G62165.2 AGL42 (AGAMOUS LIKE 42); transcription factor3216e-030

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  67%
 
101  33%

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