RadishBase

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Information for unigene UN24490

FASTA Sequence

Unigene ID: UN24490	Length: 1444	SSR
TTTTTTTCCTTAATTCAACTTCATCAGAAGATCATCTTTTTATTACCGAGTCAAAGAGTGAAAGAAGATGGGTTACATGTGTGACT TTTGTGGTGAACAAAGATCAATGGTGTACTGTCGCTCCGACGCAGCCTGTCTCTGTCTCTCCTGCGACCGGAGTGTTCATTCCGCT AACGCATTGTCCAAGCGACATTCTAGAACACTCGTCTGCGAGAGATGCAATGCTCAGCCTGCTACAGTCAGGTGTGTTGAAGAAAG AGTTTCCCTCTGTCAAAACTGTGACTGGTCTGGCCACAACAACAACAACAACAACAGTTCTTCCTCGTCAAATAATCACAAGAGGC AAACCATAAGCTGCTACTCTGGTTGCCCTTCGAGCTCTGCAGCAGCACCTGCAACTTCATCATTTCCTAAGGAGGTAAGAGTATGT GAAGATGACTTTTATGGGAACTTGGGTATGGATGAAGTTGACTTGGCTCTTGAGAACTATGAAGAGCTCTTTGGGACAGCCTTTAA CACCTCTGGAGAGCTCTTTGGACAAGGTGGAATCGATTGTCTTTTCCAGAAGCATCATCAAGCAGCAGCAGCAGCAGCTCCTGAGG GAGGGAATCTGGTGCAGCCAGCTGAGAGCATTGATGATTCTTTCATGAGTTCGAAAACCGAGCCGATCATATGCTGGAGATTTTCA AGAATGTGGTGCATCATCTTCCATGCAGCTCTCAGGGGAGCCACCATGGTATCCTCAAACATCGCAGGATAACAATGCTTGCTCAC AGTCAGTGACACGTAATAACGCGGTTATGCGTTACAAGGAGAAAAAGAAGGCTCGCAAGTTTGATAAGACAGTGAGGTATGCTTCT CGGAAAGCAAGAGCTGATGTGAGAAGGCGTGTAAAAGGGAGGTTTGTCAAAGCTGGTGAAGCTTATGACTACGACCCTCTCACCCC AACCAGAAGCTACTGAAGGATTTCTCTTTAAAAAGGTAAAAAAAAAATAGATTTACATGGCGGGAAAAAAAAAATCAAACAAGAAA GGGGTTTTTGACTTATGGAGGAGAGAGTTCTCAAAGTCATAAACTGTGAAAAAACAAGACTACTACTACTCTCTGGGGTTTGAGAA GACATTAAACTGATGAGTATTGTAAAGCAAATCATTCATTCTTGGGATTCAATCTGTTTTTTTGGCCTTAGGAAGCTTCATTCTTG TTCTCTGACAAAAAAAGAAAACATTTATCCAAGTTGGGTTTCTGTTGCTTCAGGGGCGTTACACAGATCAGGGTTCCATGAATTTG TCTTGGTAGTTGGAAAATGCAGGGAGACTATAGTGTAAAAAGTTAAAAACAAAATGATTGTATATGACTTGTGTATGTAATGTATG TATGCTCATAAGTGCTTTGCACTGTGCATTCTTGTAAATTAAAGACAGTATCCAGAATCTTTATCAGC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
ADK63401 B-box type zinc finger protein [Brassica rapa]	563	2e-055
NP_187422 zinc finger protein CONSTANS-LIKE 9 [Arabidopsis thaliana]	559	6e-055
XP_002882541 hypothetical protein ARALYDRAFT_478095 [Arabidopsis lyrata subsp. lyrata]	556	1e-054
NP_199636 zinc finger protein CONSTANS-LIKE 10 [Arabidopsis thaliana]	500	4e-048
XP_002865623 zinc finger (B-box type) family protein [Arabidopsis lyrata subsp. lyrata]	497	1e-047

Swiss-Prot top hits (Blast detail)	Score	e value
Q9SSE5 Zinc finger protein CONSTANS-LIKE 9	559	3e-056
Q9LUA9 Zinc finger protein CONSTANS-LIKE 10	500	2e-049
O23379 Putative zinc finger protein CONSTANS-LIKE 11	299	4e-026
O22800 Zinc finger protein CONSTANS-LIKE 14	291	3e-025
Q9LJ44 Zinc finger protein CONSTANS-LIKE 12	282	4e-024

TrEMBL top hits (Blast detail)	Score	e value
A1A6H1 AT3G07650 protein	559	4e-055
C6TJY7 Putative uncharacterized protein	475	2e-045
B7FIW6 Putative uncharacterized protein	467	2e-044
B9IAW0 Predicted protein (Fragment)	462	8e-044
B9SF29 Transcription factor, putative	461	1e-043

Arabidopsis top hits (Blast detail)	Score	e value
AT3G07650.1 COL9 (CONSTANS-LIKE 9); transcription factor/ zinc ion binding	559	2e-057
AT3G07650.2 COL9 (CONSTANS-LIKE 9); transcription factor/ zinc ion binding	559	2e-057
AT3G07650.3 COL9 (CONSTANS-LIKE 9); transcription factor/ zinc ion binding	559	2e-057
AT3G07650.4 COL9 (CONSTANS-LIKE 9); transcription factor/ zinc ion binding	559	2e-057
AT5G48250.1 zinc finger (B-box type) family protein	500	2e-050

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	3			100%

Unigene Members	Member information