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Information for unigene UN24493

FASTA Sequence
Unigene ID: UN24493Length: 1557 SSR 
CCAGCACCAACCGTACTGTTCCTCCTCTTCCTCCTCCTGCTTCAGCTATGGTGAGAAAGAGATTAGCTTCCGAGATGTCTTCATCT
CCTTCCTTAAACAACAACCAACGTCTTCCCCCTCCTCACCGCGTCTCACACCTCCCTGACTCCTCCTCCAACTACATCATCACGCC
TGACTCGACAACCCACCCGACACCGCCCGTCTCCGTCTGCGGCTTCTCCGGTCTTCCGGTTTTTCCTTCCGACAACAACAACCGGA
CAACAACAGCCATGTCCGTACAACCAATGGAACAACAACAACAACAACAACAACAAGACTCCTCTGCTTCATCTTCTTCTTCACCA
ACGGTCTGGGTGGACGCCATCATCAGAGACTTAATCAACTCCTCAGCTTCGGTCTCTATCCCTCAGCTTATCCAAAACGTCAGAGA
CATCATCTTCCCTTGTAACCCTAACCTCGGCGCTCTTCTCGAGTACAGACTCCGCTCTCTCATGCTTCTCGATCCTCCTCCTTCCT
CCGACCCTCCTCCTCCTTTCGACTCCATCTCTCAATACCATCAGATCTCCAACAACCCTTCTCCTCCTCCTCTAACACAACAGCAA
CAGCCTAAACCTCCTCCTCCTCCTCCGGTTCAGCAGCAAGAAAGAGAAAACTCTCCACCACCGCCCGAGACCGTGACCACCACCAC
AAACACAAACACAAACACGGCGGAGGCGTTGAGAGAGAGAAAAGAAGAGATCAAAAGACAGAAACAAGACGAGGAAGGCCTCCACC
TCCTCACTCTCCTCCTCCAGTGCGCCGAAGCCGTCTCCGCGGACAACCTCGAGGAAGCCAACAAGCTCCTCCTCGAGATCTCTCAG
CTCTCCACTCCCTACGGAACCTCCGCGCAGCGCGTCGCCGCCTACTTCTCGGAAGCCATGTCCGCTCGCCTCCTCAACTCCTGCCT
CGGCATCTACGCCGCCCTCCCTTCCCGCTGGATGCCCCAGACCCACAGCCTCAAGATGGTCTCCGCCTTCCAGGTCTTCAACGGGA
TCAGCCCCCTCGTCAAGTTCTCCCACTTCACGGCCAACCAGGCGATCCAGGAGGCCTTCGAGAAAGAGGACTGCGTCCACATCATC
GATCTCGACATCATGCAGGGGCTTCAGTGGCCTGGTCTGTTTCATATACTCGCTTCTAGACCTGGTGGTCCTCCTCACGTGCGTCT
CACGGGACTTGGTACTTCTATGGAAGCTCTTCAGGCTACTGGGAAGCGTCTTTCGGATTTCGCGGATAAGCTCGGCTTGCCTTTTG
AGTTCTGTCCTTTGGCTGAGAAAGTTGGGAACTTGGATGCTGAGAGACTTAATGTGAGGAAGAGAGAAGCTGTTGCTGTTCATTGG
CTTCAGCATTCTCTTTATGATGTTACTGGCTCTGATACACACACTCTATGGTTACTCCAAAGATTAGCTCCAAAGGTGGTGACAGT
AGTGGAACAAGACTTGAGCCATGCTGGTTCTTTCCTTGGAAGATTTGTGGAAGCGATACATTACTACTCGGCGCTGTTTGATTCCT
TGGGAGCTA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_190990 protein scarecrow [Arabidopsis thaliana]21332e-237
XP_002876247 hypothetical protein ARALYDRAFT_485819 [Arabidopsis lyrata subsp. lyrata]21305e-237
AAB06318 SCARECROW [Arabidopsis thaliana]21296e-237
BAJ33869 unnamed protein product [Thellungiella halophila]16394e-180
NP_001065617 Os11g0124300 [Oryza sativa Japonica Group]13966e-152

Swiss-Prot top hits (Blast detail)Scoree value
Q9M384 Protein SCARECROW21445e-240
Q2RB59 Protein SCARECROW 113963e-153
Q9FUZ7 Protein SCARECROW13246e-145
Q2Z2E9 Protein SCARECROW12824e-140
Q9AVK4 Protein SCARECROW12502e-136

TrEMBL top hits (Blast detail)Scoree value
B9S1W4 Transcription factor, putative13104e-142
B9IGZ8 GRAS family transcription factor12952e-140
B9MTQ9 GRAS family transcription factor12738e-138
Q5NDC9 SCARECROW12683e-137
C5Y3L1 Putative uncharacterized protein Sb05g00150012532e-135

Arabidopsis top hits (Blast detail)Scoree value
AT3G54220.1 SCR (SCARECROW); protein binding / protein homodimerization/ sequence-specific DNA binding / transcription factor21444e-241
AT5G41920.1 scarecrow transcription factor family protein7681e-081
AT1G63100.1 scarecrow transcription factor family protein4132e-040
AT1G50420.1 SCL3; transcription factor4096e-040
AT2G01570.1 RGA1 (REPRESSOR OF GA1-3 1); protein binding / transcription factor4061e-039

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
212  50%
 
121  25%
 
201  25%

Unigene MembersMember information