RadishBase

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Information for unigene UN24597

FASTA Sequence

Unigene ID: UN24597	Length: 836		SNP
AATGCTCGGAATTTCGCTGGATGAAGCTGTCTTTAACTCTGCTGCAGCTTTGTACTACAATGCAGAGTTTATGCAATGGGTAGTGG ATAAAATACCAGACCAGGCGCTTTTGAACACTGCTAGGTGGAGGTTCATCATTCCACAACTATACAGGAAGTACCCAAACCAGGAT ATGAATCTGAACATCAGTTTGTCATCGCCTCCTCTTGTAAAGATATCAGAGCAGTATGTGGGAGCTAATGTGAACGCGGACCTAGT AATCAATGTTCTAGAAGCAGACCAAGTGATACCAGTAGCATGCATCTCCTTGGTGATCCGAGGGTCGGGTGCTCTCAGAGTGATGG GTAATAACCTTGGAGGCAGCGTGAGATTAGAGGATTTCTCCATGTCTTTGGAGTGGAGCAACATTGGAAATCTCCATCTGCATCTT CTTCAGCCAATAGTGTGGACCGTTATACAAACTGTGTTTGTGCCATATGCAAATGACCATCTAGAAAAAGGCTTCCCTTTGCCCAT AATCCACGGATTCACACTTGAGAAGGCTGAAATCATCTGCTCAAGCTCTGAAATCACGGTTTGCAGCGATGTTGCCTACTTGGATT CGTCTCAACAGCCTCGGTCACAGTTGAGTCTATCAAGTTCTACGCCTTGGATAACCACGTTGTTATAGTTTACAATTGGCGGTTGT AAGTGTCAGTATTGGGGTCTGGTATCTGGACCAGAGACTGGACTACCAAGACAAACAAAACTCTGTATATTACTTTTGTATCTTGA TGTTGATCAAACTGTGTATGCTATTCTTCTTTATATGAAATAAAAATGTCTTTGCAAAAAAA

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002889530 hypothetical protein ARALYDRAFT_887673 [Arabidopsis lyrata subsp. lyrata]	1022	6e-109
NP_563724 lipid-binding serum glycoprotein-like protein [Arabidopsis thaliana]	1001	2e-106
NP_849593 lipid-binding serum glycoprotein-like protein [Arabidopsis thaliana]	1001	2e-106
AAM65272 unknown [Arabidopsis thaliana]	1001	2e-106
XP_002321159 predicted protein [Populus trichocarpa]	808	4e-084

Swiss-Prot top hits (Blast detail)	Score	e value
Q8VYC2 Putative BPI/LBP family protein At3g20270	409	3e-039
P17213 Bactericidal permeability-increasing protein	181	8e-013
Q2TBI0 Lipopolysaccharide-binding protein	171	1e-011
Q28739 Bactericidal permeability-increasing protein (Fragment)	167	4e-011
P18428 Lipopolysaccharide-binding protein	166	5e-011

TrEMBL top hits (Blast detail)	Score	e value
Q3E6Y7 Putative uncharacterized protein At1g04970.2	1001	1e-106
Q8LAL8 Putative uncharacterized protein	1001	1e-106
Q9MAU5 F13M7.4 protein	1001	1e-106
B9IAM2 Predicted protein	808	3e-084
B9SSH9 Lipopolysaccharide-binding protein, putative	788	5e-082

Arabidopsis top hits (Blast detail)	Score	e value
AT1G04970.1 lipid-binding serum glycoprotein family protein	1001	6e-109
AT1G04970.2 lipid-binding serum glycoprotein family protein	1001	6e-109
AT3G20270.1 lipid-binding serum glycoprotein family protein	409	3e-040
AT3G20270.2 lipid-binding serum glycoprotein family protein	409	3e-040

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	3			50%


10	2			33%


11	1			17%

Unigene Members	Member information