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Information for unigene UN24712
| FASTA Sequence |
| Unigene ID: UN24712 | Length: 1680 |
SSR | | ACACTTCTATTCTTTGTTCTATGTAAATAATTCAACTTTCGAATCTGTAAGCTTACAGTTTTATTGTACAAAGTGGATGAATCCTC
TTGCACTTTTATGAATGTTTTCTTTTTTTACAAATAATCAAGAAACCCCTCATGTTAAAAAGAAAAGAAAAGAAAAGAAAAACCCG
TGTTCTTGTCTCGTTCTGTTTACAAGCTCATTGCTCTTGCTGAACCTATTCGTTCATCAACCGTTGTTTCTGTAGCATCTTTCGAC
TTGTACTCATTGAGGTAACGATCAAAAGCCCCGTCTCCTCTAAGTAGTTTTGCTGTGCATCCACGGGAAGCTTCTGCGCCTGTTGA
ATCCTCATCTACAATAACAGCGTCGATCCTTTCGTCTCCCTTCTTAGCATCTGGAATCTCAAACATGGCTTCGGTAAGAATGCTTT
CAAGCAAGGCTCTTAGCCCCCTCGCATCTGTATTCTTCACCATCGCTAGCTTGGAAATGATCCCCAACGCTTTCTCAGTAAAATGT
AACTTTACATTGTTCATACTAAAGAGTTTCTTGTACTGTTTCCCAAGAGCATTTTTGGGTTCTACAAGAACCCGAATGAGCTGGTC
CTCTGTTAGAGCTGACAAGCTAACTAATATGGGAAAGCGCCCTACAAACTCAGGTATAAGGCCATATGCTGTAAGATCAGCACTCT
CCACCGATTCTAGCAAAGATGAAGTTATTGCACCGCTGGTAACTCCACTGGTAGCCATGTTGGCACGGACAGGAGCTCCAAAACCA
ATTGATGAATCTTGTCGTCTATCCACAATGGTCTTCTCAAGGTCAACAAATGCTCCTCCACAGATAAAGAGGATATCCTTTGTGTC
TATCTGTATATGGTCAGCCCGTGGATGCTTCCTTGCTCCCTTCCCTGGAACATTTACGATAGTGCCTTCTAGTAATTTCAAAAGTG
CATGTCGGACTCCTTCCCCGGATACATCCCTGCTAATGTTTAAACTCTCAGCCTTCTTCGTTATCTTATCAACTTCATCGATATGG
ACTATTCCCTGCTGTGCTGCTTGCACGTTGAACTCAGCGACCGTTAGTAGTTTATGAAGGATTGATTCAACATCATCACCAACATA
GCCAGCCTGAGTCAGTGTAGTTGCATCAGCAATGACAAATGGAACATTTACAAGCCGAGCCAAAGTCTTTGCAAGTAATGTCTTCC
CAGAGCCGGTAGGCCCCATCAAAAGAACGTTGCTCTTATCTAATTCTACATTATCGTCATCATCAATTGGTTGTGCTGCTGACCCT
TTCTTCATAGAGGTATGATATATTCTCTTGTAATGGTTATACACAGAAACAGAGAGCACCTTTTTTGCACGGCTTTGGCCAATGAC
GAACTTGTCAAGCCATTTGCAAATCTCTTTCGGAGTAGGAAAGTCTCTGCCTAGGCTAGCTCCACCCCAACGACTAACGTCTTTAG
CTGCTGCATCTGGTAACGGAGAAGCATCCACTTTAACAGCGCCGTTAGAAGCTGGAGCGATGTTGTTAGGAGGAGGAGGAGGAGGA
GAAGACCAATCCTCAGGTGGCTCAGCACCGTAAGATCTGAGCGTATCCCAGAAGGAAGATCTGAGCTTGATTCTGTGATTGGAGAT
TGGATGCGGATCCTTTGAATGTTGTTTCCTAATGGTGGTCGTTGTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_564423 ATP-dependent Clp protease [Arabidopsis thaliana] | 2211 | 2e-246 |
| XP_002893761 hypothetical protein ARALYDRAFT_473508 [Arabidopsis lyrata subsp. lyrata] | 2174 | 4e-242 |
| AAG51286 CLP protease regulatory subunit CLPX, putative [Arabidopsis thaliana] | 1977 | 3e-219 |
| XP_002264217 PREDICTED: hypothetical protein [Vitis vinifera] | 1778 | 3e-196 |
| XP_002519956 ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis] | 1654 | 8e-182 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| B2JGL6 ATP-dependent Clp protease ATP-binding subunit clpX | 958 | 2e-102 |
| A9AJR1 ATP-dependent Clp protease ATP-binding subunit clpX | 957 | 2e-102 |
| A3NWA5 ATP-dependent Clp protease ATP-binding subunit clpX | 956 | 3e-102 |
| A3NAI4 ATP-dependent Clp protease ATP-binding subunit clpX | 956 | 3e-102 |
| Q63V40 ATP-dependent Clp protease ATP-binding subunit clpX | 956 | 3e-102 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q66GN9 At1g33360 | 2211 | 1e-246 |
| Q9C874 CLP protease regulatory subunit CLPX, putative | 1977 | 2e-219 |
| B9S1U1 ATP-dependent clp protease ATP-binding subunit clpx, putative | 1654 | 6e-182 |
| Q9C814 CLP protease regulatory subunit CLPX, putative; 15869-19379 | 1650 | 2e-181 |
| B7FAD8 cDNA, clone: J100065N04, full insert sequence | 1620 | 5e-178 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G33360.1 ATP-dependent Clp protease ATP-binding subunit ClpX, putative | 2214 | 3e-249 |
| AT5G53350.1 CLPX; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding | 1553 | 2e-172 |
| AT5G49840.1 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding | 1352 | 3e-149 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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