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Information for unigene UN24798

FASTA Sequence
Unigene ID: UN24798Length: 685 SSR 
GGGCACTAGAGAGCTTTTACTAGATTCTAGAGAGGCAGCTTGCTTGACCTTCTCTCCTGAACGATCCCGCCAAAGACACTGAGAGA
GAGAGAATCAGTGAGCTGAAGAGATCCAGCGAAGATGAGTACAATGAAGTTTTGTCGCGAATGTAATAACATCTTATACCCTAAGG
AAGACAAGGAGCAATCGATACTCCTCTACGCTTGCCGTAACTGTGATCACCAGGAAGCGGCGGATAACAACTGTGTGTACAGAAAC
GAGGTTCATCATTCCGTAAGTGAACAGACGCAGATCCTATCCGACGTCGCTTCTGACCCCACTCTTCCCCGCACCAAGGCTGTCCG
CTGCGCCAAGTGTCAACACGGCGAAGCTGTCTTCTTCCAGGCTACTGCTAGAGGAGAAGAAGGAATGACACTGTTCTTCGTTTGCT
GCAACCCTAATTGTGGCCATCGCTGGAGAGAATAGAACTCTGTTGTAAGGCTACATTGACCCTCTGTGATGTGTTATTGACTTCCC
CCTTTTAAGGGTTTCATACATTCACTTTGGAGTTTTCTGTGTACAAATATGAAAACCGTGGGGATGTTATTGACTTCTTGAATTTT
CAGGGTCTTTTATGATCGTTTTAGTTTTACCAGCTTCTAATTATGAATTTGCTGGTTTCTGAGATAAAAGCTTTTTTTCCTCT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_567490 RNA polymerases M/15 Kd subunit [Arabidopsis thaliana]6301e-063
XP_002883036 hypothetical protein ARALYDRAFT_318462 [Arabidopsis lyrata subsp. lyrata]6102e-061
NP_188323 DNA-directed RNA polymerase II subunit I [Arabidopsis thaliana]6058e-061
ABD32320 DNA-directed RNA polymerase, subunit C11/M/9 [Medicago truncatula]5888e-059
XP_002276956 PREDICTED: hypothetical protein [Vitis vinifera]5833e-058

Swiss-Prot top hits (Blast detail)Scoree value
Q32P73 DNA-directed RNA polymerase II subunit RPB94092e-039
P36954 DNA-directed RNA polymerase II subunit RPB94092e-039
P60898 DNA-directed RNA polymerase II subunit RPB94092e-039
P60899 DNA-directed RNA polymerase II subunit RPB94092e-039
P36958 DNA-directed RNA polymerase II subunit RPB94021e-038

TrEMBL top hits (Blast detail)Scoree value
Q8L5V0 DNA-directed RNA polymerase subunit6308e-064
Q6NLH0 DNA-directed RNA polymerase subunit6056e-061
Q2HU21 DNA-directed RNA polymerase subunit5886e-059
A5AGZ7 DNA-directed RNA polymerase subunit5832e-058
A2ZLM4 DNA-directed RNA polymerase subunit5715e-057

Arabidopsis top hits (Blast detail)Scoree value
AT4G16265.1 NRPB9B; DNA binding / DNA-directed RNA polymerase/ nucleic acid binding / transcription regulator/ zinc ion binding6314e-066
AT3G16980.1 NRPB9A; DNA binding / DNA-directed RNA polymerase/ nucleic acid binding / transcription regulator/ zinc ion binding6063e-063

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
122  40%
 
62  40%
 
81  20%

Unigene MembersMember information