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Information for unigene UN24844

FASTA Sequence
Unigene ID: UN24844Length: 824 SSR 
GGGAGAAGAGTAACTGTAGTTTTGAAGATATGCAGGGCAAAAAAACATGTCTTCACAGAACATACCAACTCATAATAAGAGTTCAC
ACAATAACTTCAAAATAGTTCAGGATCGATGAGACAATCATGAACTGTGTCATCATCACCAGAAGCAGAGGAGATAGATAGCTTGA
CCAAACCCCTGCCTGATCAAAGGAGCAGCAGCTAATAGAAGTCGAAGGGCATTCAGGAAACAAAGGGGAATGAGAAAATAGGGAAA
CAACAAGAAGGGAACCAGAGTTTAGGGTTTTAGATGGAGGAAAAAACATCATCATAGCAATGTAGCTCAAGGTTTGATGACAAGCA
ATGTTGCAAAGAGCTTTGGTAGAACATTTATATGTCGGGTCGTGCTGGTATATATTGATTAACATTTCCTCCAATCATCAATCATC
GTCATCATCAAACGAGTCGTCATCATCATCATCAACTTCATCGTTCTTGGCTTCCATCATCTCTATCTCCCTCAGCTCTTCGTCAT
CCCCTTCCACAAGATAACGCTTCCCTGACCTTTCTAATGGAAAATCCGCCACAAGTGTCACATCTGGTCTTTCTTCTTTCAGCTTC
TCCAGAGGTAACGTAGGGTTGTAAGATCTAGATCTCACGCCACCATCAGAAACTAAGCCGTTGTTGCTTGAAACATCAATATGACG
AATGAATTTGAAGTTTCCTTGGAGTAATGAATTACAGAGTTCCAAGACTTCGTTCTCCTCTAGTTTAACGCAGTTGCGCATTATTA
GAGTTTTAAGTGGATTCTCTTTGCAGCTATTTCCCAAATCCCTCAAAAAA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAD42970 unnamed protein product [Arabidopsis thaliana]4105e-038
NP_192183 F-box protein SKIP17 [Arabidopsis thaliana]4105e-038
XP_002872816 hypothetical protein ARALYDRAFT_490282 [Arabidopsis lyrata subsp. lyrata]3863e-035
XP_002862153 predicted protein [Arabidopsis lyrata subsp. lyrata]2717e-022
XP_002872820 hypothetical protein ARALYDRAFT_911934 [Arabidopsis lyrata subsp. lyrata]2546e-020

Swiss-Prot top hits (Blast detail)Scoree value
Q0WRC9 F-box protein SKIP174102e-039
Q9SY03 F-box protein At4g027602202e-017

TrEMBL top hits Scoree value
No hits found  

Arabidopsis top hits (Blast detail)Scoree value
AT4G02740.1 CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02760.2); Has 1691 Blast hits to 1200 proteins in 170 species: Archae - 2; Bacteria - 109; Metazoa - 687; Fungi - 197; Plants - 199; Viruses - 23; Other Eukaryotes - 474 (source: NCBI BLink).4102e-040
AT4G02760.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02740.1); Has 3231 Blast hits to 948 proteins in 145 species: Archae - 0; Bacteria - 50; Metazoa - 1253; Fungi - 344; Plants - 69; Viruses - 27; Other Eukaryotes - 1488 (source: NCBI BLink).2202e-018
AT4G02760.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02740.1); Has 3231 Blast hits to 948 proteins in 145 species: Archae - 0; Bacteria - 50; Metazoa - 1253; Fungi - 344; Plants - 69; Viruses - 27; Other Eukaryotes - 1488 (source: NCBI BLink).2202e-018

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
92  67%
 
71  33%

Unigene MembersMember information