 |
Information for unigene UN24892
| FASTA Sequence |
| Unigene ID: UN24892 | Length: 1401 |
SSR | | CAGCTCGATGACGACGACGACGACGACGAGTCCGGTGGCTCGAGCCTCCGTGCAACTTCAAAATTATTTACCATTAAGTCTACGTT
CAAGACAGCCACCGGGAGGAGTATGTTTAGCCTTGTGGCCGCCTTCGCCGTCTCGCAGGACTCCACGGCTTGTCTGTATGGCAGAA
CCTTACCTCATTACGAAAATGGAGTCTGTTGAGAAGACTTGGAAGGAGTTATCTGTAAAATTAGCTGACCCAGATGTTGTTTCTAA
TCCTTCTGAATACCAAAAACTTGCACAGTCCATGTCCGAGCTTGACGATGTTGTATCCGTTTTCAGGAGATTCAAGGACTGTGAGA
AGCAGTTACAAGAATCCAAAGTTTTGGCGAAAGAGGCTGGAGATGATGAAGATATGGCTGAAATGATAGGAAGTGAGATCAACTCC
CTCTCTAAAGAAATTGAGGAGCTTGAAAAACAACTTAAGATGTTACTTCTTCCTACCAATCCTCTTGATTCCAGAAACATTTTGCT
CGAAGTCAGAGCAGGAACTGGTGGAGATGAAGCTGCTATTTGGACCGGTGACCTTGTAGGTGCGGATGTATCAGAGGTACAGCGAG
CGCAGCTCTTGGAAGTTTTCTCTGGTTTCATGCTCTGAGGCTGAACATGGAGGTTACAAGACGTGTGTGATGGAGATTAAAGGAAA
CCGTGTCTACAGCAAGCTCAAGTACGAATCTGGTGTTCATAGAGTCCAGCGTGTCCCTCAAACTGAAACACAGGGCCGTGTACACA
CTTCTACAGCTACTGTAGCCATCATGCCTGAGGCTGATGAAGTGGAAGTTGTGATTGACCCCAAGGACATTGAACTTACAACTGCA
AGATCTGGTGGCGCTGGAGGGCAAAACGTGAACAAGGTGGAGACGGCTATAGATCTAGTCCATAAACCAACAGGTATACGCATTTT
CTGTACAGAAGAAAGGACTTAGCTACGGAACAAGGCTCGTGCTTTCCAGCTTCTTCGAGCTAAACTATATGAAATCAAATTAAGGG
AACAACAAGAGAAGATAAGGGATCAAAGAAAATCTCAGGTTGGGACTGGAGCTCGTTCAGAAAAGATAAGAACATATAATTATAAG
GTGGATAGTAGAGTGACAGATCATAGGCTAAAGATGAACTTTCCGCTTACTTCATTTCTTGAAGGTGGCTTAGAGGATGCAGTGCA
GGCTTGTGCTGCTTTGGAACAAAAGGAACTCATGGAAGAACTGTCCGAGTCTGTAGCTGCTTCTTGATAAAGCCTCAAAACTATAA
TCATCAAATGGAAATCTTTGGACAGACATCATAATACTATGGAATCTCTATTTATTTGTCAAAGTCTTTGAGCGTACTGATGAATG
ACAATGCATACGTTGTTCTCTAAGC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_191850 Peptide chain release factor 1 [Arabidopsis thaliana] | 1098 | 2e-117 |
| XP_002878486 hypothetical protein ARALYDRAFT_907869 [Arabidopsis lyrata subsp. lyrata] | 1097 | 3e-117 |
| XP_002520666 peptide chain release factor, putative [Ricinus communis] | 1004 | 2e-106 |
| ACU20952 unknown [Glycine max] | 990 | 6e-105 |
| XP_002269884 PREDICTED: hypothetical protein [Vitis vinifera] | 983 | 4e-104 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8DMG9 Peptide chain release factor 1 | 845 | 2e-089 |
| Q2JL68 Peptide chain release factor 1 | 830 | 1e-087 |
| Q2JUK1 Peptide chain release factor 1 | 822 | 8e-087 |
| Q3MF91 Peptide chain release factor 1 | 820 | 1e-086 |
| Q8YPK9 Peptide chain release factor 1 | 819 | 2e-086 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8RX79 AT3g62910/T20O10_10 | 1098 | 1e-117 |
| B9S3U7 Peptide chain release factor, putative | 1004 | 1e-106 |
| C6TGK0 Putative uncharacterized protein | 990 | 4e-105 |
| B9I9V3 Predicted protein | 973 | 4e-103 |
| Q9LYD0 Translation releasing factor RF-1-like protein | 961 | 1e-101 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G62910.1 APG3 (ALBINO AND PALE GREEN); translation release factor/ translation release factor, codon specific | 1098 | 7e-120 |
| AT2G47020.1 peptide chain release factor, putative | 472 | 3e-047 |
| AT2G47020.2 peptide chain release factor, putative | 357 | 6e-034 |
| AT5G36170.1 HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109); translation release factor/ translation release factor, codon specific | 326 | 2e-030 |
| AT5G36170.2 HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109); translation release factor/ translation release factor, codon specific | 326 | 2e-030 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
