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Information for unigene UN24914
| FASTA Sequence |
| Unigene ID: UN24914 | Length: 1045 |
SSR | | CAGGTCCAACATCTTTTGCACCTATCATCGAAAGGGCCGTGACCATTGTGGAAGAAAGTGGAGGCCAGTACCATGTTCTTCTCATT
ATCGCTGATGGACAGGTAACAAGAAGTGTTGATACAGAGAATGGGGCAGTGAGTCCACAAGAGCAGCAGACCATTGACGCCATTGT
TAGAGCAAGTGAGTATCCTTTGTTGATTGTTCTTGTTGGTGTTGGAGATGGCCCTTGGGACACTATGAGACAGTTTGATGACAACA
TCCCCGCTCGTGCCTTTGACAATTTCCAGTTTGTGAATTTCACGGATATAATGTCAAAGAACGTTGATCCAGCAAGAAAAGAGGCA
GAGTTTGCGCTTTCTGCGTTGATGGAGATCCCATCTCAGTACAAAGCCACCCTTGAGCTAGGCTTACTAGGAAGGAGAACTGGAAA
CTGTCCAAACAGGTTTGCGCTTCCACCACCAACTTATGCTACTCAGTCCATGCGCAACAACAGTCCAAGAACTTCTCGATCAACCA
GCTTTCAGACCAGAACACCACAACCATATGATAATGGTGTTGCCGCCGCCGCCGCCACTGCACCACTTCCAAACACTCGCAATGAT
GGTCAGCTTTGTTCTATATGTCTAGTGATACCAAAGAACATGGCTTTCAATTGTGGTCATCAGACTTGTTCTGATTGTGGGGAAGA
CCTCCATGTTTGTCCCATTTGCCGAAGCTCAATCTCGGTTCGTATCAAGCTTTATTAAGATAAAACTCTCTCAGGGGGGCTCGAGG
TGATCAGACATCTTTCAGAACACAGCTCGAGTGAGTTTTGGAACTAGTTTTCATCAATGGTTTGTGGTGGAGATATGACCAGTGTC
CTTGCTTGCATTTGTAGATAATTTTGTTCAGTTTTTGCATTCTCATTGCACATAAAAACACACTCTCTCTTGTATCGTCAGGGGAG
AGACGTAAGTAAAATAAAGCATCTTTGATTCTGCTGCAACAGCCTCGTGTTGACAGACTTTTGTACATATGAATTCAATCCTTCTT
CTCTGAAGAGTCT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002888625 hypothetical protein ARALYDRAFT_475885 [Arabidopsis lyrata subsp. lyrata] | 1051 | 4e-112 |
| NP_849857 Copine (Calcium-dependent phospholipid-binding protein) family protein [Arabidopsis thaliana] | 1040 | 7e-111 |
| NP_564907 Copine (Calcium-dependent phospholipid-binding protein) family protein [Arabidopsis thaliana] | 1040 | 7e-111 |
| XP_002315654 predicted protein [Populus trichocarpa] | 888 | 3e-093 |
| XP_002511290 copine, putative [Ricinus communis] | 866 | 1e-090 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LY87 E3 ubiquitin-protein ligase RGLG2 | 851 | 2e-090 |
| Q9SS90 E3 ubiquitin-protein ligase RGLG1 | 641 | 5e-066 |
| Q09221 Copine domain-containing protein 2 | 252 | 7e-021 |
| Q9HCH3 Copine-5 | 164 | 1e-010 |
| Q8JZW4 Copine-5 | 158 | 5e-010 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q3ECG6 Putative uncharacterized protein At1g67800.2 | 1040 | 5e-111 |
| Q8LB88 At1g67800 | 1040 | 5e-111 |
| B9HTQ4 Predicted protein | 888 | 2e-093 |
| B9RAR5 Copine, putative | 866 | 7e-091 |
| B9SLV5 Copine, putative | 863 | 2e-090 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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