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Information for unigene UN24930
| FASTA Sequence |
| Unigene ID: UN24930 | Length: 867 |
SSR | | CTTTGACGGAGATGGCACTGTCTCAGTCTACCTCACTCCCGACTTTACAGTCTCCGTTCCACAAACTTCAATTCGTCGGAGTATCT
CGAAATCGGAGAGAACTTACAATCCCGACGACGGCGAAAACTCCCACCAGATGTTCTTTGGTTTCGTTATGTCATCATACGGCGAA
GAGAAGCAATCCGCGGACAATCAGCTGCGTCGCCGGAGATTTTCCCGACGATGGAGCCAGAGAAGCATCTTCGTCTACTTCTACTT
CTACCTCGTCGATCTTCGTGAAGGGGCTTGCGGATTCAGTGAGTGAAGGTCGTTTGAAGAAGGTCTTCTCGGAGTTTGGAGAAGTT
AGCCATGTAAAAATCATCGTGAACGAAAGGACTCGGCAGTCTCTAGGATATGGCTATGTTTGGTTTACCAAAAGAGATGATGCACA
GTTGGCCGTCGAAGCTATGAACGGAAAGTTCTTTGATGGCAGGTTTATACTTGTTAAGTTTGGTCAGCCTGGACTGTCACGTCGCC
GGAGATCACATTCCGATTTTCTTTTTGTGAATAAATGATCTTACTATATTTTATGTTTTGAGCGAATGTAATAAAAACTAGGATTC
TAAAGCCGGGACCTGAATATTGTATGTCCCAATGGAACTAGGATTCATGGCTTAAGGGTGAGAAGCAAGATCCCTGCCATGTTCTT
TGTCTTCATAAAATGGTTTTGTTTTCTTTAGCAACCTCTCTTTCAATGTTGTATCACTTACTGTATTCCCTTCAAAGAATTAATGT
CTCATCGATGAGAGAGAGAGAGAAACACCAAGGTTGTAACCAAATTTCATTGGATCTTTGATCTTAAAACAAAGCATTGAAAAAGA
TTCAGAC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002873925 predicted protein [Arabidopsis lyrata subsp. lyrata] | 524 | 3e-051 |
| NP_197404 RNA recognition motif-containing protein [Arabidopsis thaliana] | 522 | 6e-051 |
| NP_974808 RNA recognition motif-containing protein [Arabidopsis thaliana] | 335 | 3e-029 |
| CBI26179 unnamed protein product [Vitis vinifera] | 262 | 8e-021 |
| XP_002280240 PREDICTED: hypothetical protein [Vitis vinifera] | 198 | 2e-013 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P60826 Cold-inducible RNA-binding protein | 162 | 1e-010 |
| Q14011 Cold-inducible RNA-binding protein | 162 | 1e-010 |
| P60824 Cold-inducible RNA-binding protein | 162 | 1e-010 |
| Q5RF83 Cold-inducible RNA-binding protein | 162 | 1e-010 |
| P60825 Cold-inducible RNA-binding protein | 162 | 1e-010 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q3E9D1 Putative uncharacterized protein At5g19030.1 | 522 | 4e-051 |
| Q3E9D0 At5g19030 | 335 | 2e-029 |
| B9HQ39 Predicted protein | 190 | 1e-012 |
| B9T5A2 RNA binding protein, putative | 179 | 2e-011 |
| C6T363 Putative uncharacterized protein | 170 | 3e-010 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G19030.1 RNA recognition motif (RRM)-containing protein | 523 | 2e-053 |
| AT5G19030.2 RNA recognition motif (RRM)-containing protein | 335 | 1e-031 |
| AT5G19030.3 RNA recognition motif (RRM)-containing protein | 176 | 3e-013 |
| AT3G20930.1 RNA recognition motif (RRM)-containing protein | 157 | 5e-011 |
| AT3G08000.1 RNA-binding protein, putative | 156 | 6e-011 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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